SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene30278

Length: 199 nt

UniGene Fasta

>uagpf_v2_unigene30278
CGTCGTGACCTTGGCTGTCACTCAATTAAGGGGTTTGGGCCTAGAGCACATGAATAATAATCGGCCCGTAATTCCAGCAATACTTGATTCATCTACATTGCGAAATATTGAGTTCCAAATTGATATATTCCGTTTGAGGGAGCGTGATTTATTGGAACGTTTGGCAAGAGAAATATCTCAACGTGTTTCTCAAGGCACA

Ace file of the UniGene uagpf_v2_unigene30278

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene107	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Acyl-coenzyme A oxidase 3, peroxisomal n=3 Tax=Arabidopsis RepID=ACOX3_ARATH	-	-	62%
FL-Next	sp=Acyl-coenzyme A oxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	acyl- oxidase acx3	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acyl-CoA dehydrogenase.	EC:1.3.99.3	-	0.0	79%

Source	KEGGs	Term	Type	Identity
Blast2go	Fatty acid metabolism	00071		79%
Blast2go	Valine, leucine and isoleucine degradation	00280		79%
Blast2go	beta-Alanine metabolism	00410		79%
Blast2go	Propanoate metabolism	00640		79%
Blast2go	Metabolic pathways	01100		79%
Blast2go	Biosynthesis of secondary metabolites	01110		79%
Blast2go	Acyl-CoA oxidase.	EC:1.3.3.6	-	79%

Source	KEGGs	Term	Type	Identity
Blast2go	Fatty acid metabolism	00071		79%
Blast2go	alpha-Linolenic acid metabolism	00592		79%
Blast2go	Biosynthesis of unsaturated fatty acids	01040		79%
Blast2go	Biosynthesis of plant hormones	01070		79%
Blast2go	Metabolic pathways	01100		79%
Blast2go	Cytochrome-c oxidase.	EC:1.9.3.1	-	79%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Oxidative phosphorylation	00190		0.0	79%
Blast2go	Metabolic pathways	01100		0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	medium-chain fatty acid metabolic process	GO:0051791	Biological Process	79%
Blast2go	fatty acid beta-oxidation	GO:0006635	Biological Process	79%
Blast2go	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	79%
Blast2go	acyl-CoA dehydrogenase activity	GO:0003995	Molecular Function	79%
Blast2go	acyl-CoA oxidase activity	GO:0003997	Molecular Function	79%
Blast2go	cytochrome-c oxidase activity	GO:0004129	Molecular Function	79%
Blast2go	peroxisome	GO:0005777	Cellular Component	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTG5

Fln msg: Distance to subject end: 124 aas, your sequence is shorter than subject: 66 - 680

Fln protein: VVTLAVTQLRGLGLEHMNNNRPVIPAILDSSTLRNIEFQIDIFRLRERDLLERLAREISQRVSQGT

Protein Length: 67

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTAAGGGGTTTGGGCCTAGAGCACATGAATAATAATCGGCCCGTAATTCCAGCAATACTTGATTCATCTACATTGCGAAATATTGAGTTCCAAATTGATATATTCCGTTTGAGGGAGCGTGATTTATTGGAACGTTTGGCAAGAGAAATATCTCAACGTGTTTCTCAAGGCACA

Fln Alignment:

uagpf_mira_c12315___LRGLGLEHMNNNRPVIPAILDSSTLRNIEFQIDIFXXXXXXXXXXXXXXISQRVSQGT
C0PTG5________________LRGLGLEHMNNNRPIIPAILDSSTLRNIEFQMDIFHLRERDLLERLAAEISQCVSQGT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain