SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29854

Length: 190 nt

UniGene Fasta

>uagpf_v2_unigene29854
CGTCGTGACCTTGGCTGTCACTCAGGTGTCCGTGAACAAAGTGTGTTTCCAGAAATCCAGTCTGACAGTATAGGCAGCACAAGGGGGATGGATATCTGCATCACAACTACAGCAAAAACAGACAGTGAGGCACAAAAACTCCTAGCTCTTATGGGGATGCCATTCCGAGAAGGAGTTGCACCAGTTGTGG

Ace file of the UniGene uagpf_v2_unigene29854

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6193	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=50S ribosomal protein L5, chloroplastic pdb\|3BBO\|H Chain H, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	50s ribosomal protein l5	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	79%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	79%
Blast2go	rRNA binding	GO:0019843	Molecular Function	79%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	79%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	79%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	79%
Blast2go	membrane	GO:0016020	Cellular Component	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ27

Fln msg: Distance to subject end: 19 aas, your sequence is shorter than subject: 63 - 266

Fln protein: RRDLGCHSGVREQSVFPEIQSDSIGSTRGMDICITTTAKTDSEAQKLLALMGMPFREGVAPVV

Protein Length: 64

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTGTCCGTGAACAAAGTGTGTTTCCAGAAATCCAGTCTGACAGTATAGGCAGCACAAGGGGGATGGATATCTGCATCACAACTACAGCAAAAACAGACAGTGAGGCACAAAAACTCCTAGCTCTTATGGGGATGCCATTCCGAGAAGGAGTTGCACCAGTTGTGG

Fln Alignment:

uagpf_mira_c11475___GVREQSVFPEIQSDSIGSTRGMDICITTTAKTDSEAQKLLALMGMPFREGVAPVV
C0PQ27________________GVREQSVFPEIQSDSIGSTRGMDICITTTAKTDSEAQKLLSLMGMPFREGVAPVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain