SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29659

Length: 261 nt

UniGene Fasta

>uagpf_v2_unigene29659
CGTCGTGACCTTGGCTGTCACTCAATTATGCGTCGTGACCTTTGTGTCACTCATGTACCTTTGGCGAATTACTGGAAATGAAACATATAGGGAGTGGGGATGGGATATATTTCAAGCATTTGAAAAACAAGTTCGTATCGATTCTGGCTACGTGGGACTTAGAGATGTGAATAGCGGTGAAAAGGATGATATGATGCAAAGCTTTTTTCTTGCCGAAACGTTGAAATACTTGTACCTTCTTTTCTCACCACCATCTGTTAT

Ace file of the UniGene uagpf_v2_unigene29659

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10405	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	mannosyl-oligosaccharide 1,2-alpha-mannosidase [Glycine max]	-	-	67%
FL-Next	Isoform 2 of Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 OS=Arabidopsis thaliana GN=MNS1	-	-	77%
Blast2go	mannosyl-oligosaccharide -alpha-mannosidase mns1-like	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-mannosidase.	EC:3.2.1.24	-	0.0	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Other glycan degradation	00511		0.0	78%
Blast2go	Mannosyl-oligosaccharide 1,2-alpha-mannosidase.	EC:3.2.1.113	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	N-Glycan biosynthesis	00510	78%
Blast2go	Various types of N-glycan biosynthesis	00513	78%
Blast2go	Metabolic pathways	01100	78%

Source	GOs	Term	Type	Identity
Blast2go	root development	GO:0048364	Biological Process	78%
Blast2go	N-glycan processing	GO:0006491	Biological Process	78%
Blast2go	alpha-mannosidase activity	GO:0004559	Molecular Function	78%
Blast2go	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	GO:0004571	Molecular Function	78%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	78%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	78%
Blast2go	membrane	GO:0016020	Cellular Component	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, family 47	IPR001382	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C512-2

Fln msg: Distance to subject end: 40 aas, your sequence is shorter than subject: 86 - 456

Fln protein: VVTLAVTQLCVVTFVSLMYLWRITGNETYREWGWDIFQAFEKQVRIDSGYVGLRDVNSGEKDDMMQSFFLAETLKYLYLLFSPPSV

Protein Length: 87

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTATGCGTCGTGACCTTTGTGTCACTCATGTACCTTTGGCGAATTACTGGAAATGAAACATATAGGGAGTGGGGATGGGATATATTTCAAGCATTTGAAAAACAAGTTCGTATCGATTCTGGCTACGTGGGACTTAGAGATGTGAATAGCGGTGAAAAGGATGATATGATGCAAAGCTTTTTTCTTGCCGAAACGTTGAAATACTTGTACCTTCTTTTCTCACCACCATCTGTTAT

Fln Alignment:

uagpf_mira_c11035___TFVSLMYLWRITGNETYREWGWDIFQAFEKQVRIDSGYVGLRDVNSGEKDDMMQSFFLAETLKYLYLLFSPPSV
Q9C512-2______________TVESLFYLWRLTGNKTYQEWGWNIFQAFEKNSRVESGYVGLKDVNTGAKDNKMQSFFLAETLKYLYLLFSPSSV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain