SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene28989

Length: 372 nt

UniGene Fasta

>uagpf_v2_unigene28989
CGTCGTGACCTTGGCTGTCACTCGTTTTTATGTTGAAAATGCAGTATGTTGAAGATGACCATCATTTGAGCTTCACTGTCCCCATCCATGAACCTCTTCCTCCCCAGTACTTTATTCGTGTTGTATCGGATAAGTGGTTGGGGTCGCAGACAATACTGCCAGTTTCATTTAGACATCTTATTTTGCCAGAGAAATACCCACCTCCTACTGAGTTGCTAGACTTGCAGCCACTTCCTGTGTCTGCATTAAGAAATCCTTCATATGAAGCACTATATCAACAGTTTAGACACTTCAATCCTATTCAAACTCAGGTATTTACAGTGCTTTATAACTCAGATGATAATGTTTTAGTTGCAGCACCTACTGGTAGTG

Ace file of the UniGene uagpf_v2_unigene28989

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene40476	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] ref\|NP_001185050.1\| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb\|AAD30595.1\|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gb\|AEE30046.1	-	-	83%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	89%
Blast2go	u5 small nuclear ribonucleoprotein helicase	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	95%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	95%
Blast2go	Thiamine metabolism	00730	95%
Blast2go	Metabolic pathways	01100	95%

Source	GOs	Term	Type	Identity
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	95%
Blast2go	nucleolus	GO:0005730	Cellular Component	95%
Blast2go	membrane	GO:0016020	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Sma3		IPR000097	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Sec63 domain	IPR004179	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3		IPR018127	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9RTW1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 797 aas, your sequence is shorter than subject: 123 - 2180

Fln protein: S*PWLSLVFMLKMQYVEDDHHLSFTVPIHEPLPPQYFIRVVSDKWLGSQTILPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPSYEALYQQFRHFNPIQTQVFTVLYNSDDNVLVAAPTGS

Protein Length: 124

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTTTTTATGTTGAAAATGCAGTATGTTGAAGATGACCATCATTTGAGCTTCACTGTCCCCATCCATGAACCTCTTCCTCCCCAGTACTTTATTCGTGTTGTATCGGATAAGTGGTTGGGGTCGCAGACAATACTGCCAGTTTCATTTAGACATCTTATTTTGCCAGAGAAATACCCACCTCCTACTGAGTTGCTAGACTTGCAGCCACTTCCTGTGTCTGCATTAAGAAATCCTTCATATGAAGCACTATATCAACAGTTTAGACACTTCAATCCTATTCAAACTCAGGTATTTACAGTGCTTTATAACTCAGATGATAATGTTTTAGTTGCAGCACCTACTGGTAGTG

Fln Alignment:

uagpf_mira_c9556___FMLKMQYVEDDHHLSFTVPIHEPLPPQYFIRVVSDKWLGSQTILPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPSYEALYQQFRHFNPIQTQVFTVLYNSDDNVLVAAPTGS
A9RTW1________________FLLKMQYVEEDHNLSFTVPIYEPLPPQYFVRVVSDRWLGSETVLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPSYEVLYQKFRHFNPIQTQVFPVLYNTDDNVLVAAPTGS

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
36	66		33		0.997476
37	66	33			0.997476
38	66			33	0.997476
39	66		33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain