SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene28308

Length: 240 nt

UniGene Fasta

>uagpf_v2_unigene28308
CGTCGTGACCTTGGCTGTCACTCATTCCTAAACAATATTCTCAAGAGCTTTTTTGCTTATATGCCTTCTGTCAGACCTATCCACACCCGGGATTTGGGGATCTGGTAAATAAGGTTCTAAAGGCATGTGATGGATTGCCCCTATCGTTAGTAGTGTTTGGGTCACTTCTCTCTGGAAATAACAACCCATCTTATTGGGAGGCCATACTTCGCCGATTGGAACTTCCCAGTGACATCAAGA

Ace file of the UniGene uagpf_v2_unigene28308

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1442	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Putative truncated TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS7_PINMO	-	-	43%
FL-Next	tr=Putative truncated TIR-NBS-LRR protein; Pinus monticola (Western white pine) (Strobus monticola).	-	-	49%
Blast2go	tir-nbs-lrr resistance protein	-	-	61%

Source	GOs	Term	Type	Identity
Blast2go	defense response	GO:0006952	Biological Process	61%
Blast2go	cellular process	GO:0009987	Biological Process	61%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	61%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E9NZS7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 376 aas, your sequence is shorter than subject: 79 - 815

Fln protein: S*PWLSLIPKQYSQELFCLYAFCQTYPHPGFGDLVNKVLKACDGLPLSLVVFGSLLSGNNNPSYWEAILRRLELPSDIK

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCCTAAACAATATTCTCAAGAGCTTTTTTGCTTATATGCCTTCTGTCAGACCTATCCACACCCGGGATTTGGGGATCTGGTAAATAAGGTTCTAAAGGCATGTGATGGATTGCCCCTATCGTTAGTAGTGTTTGGGTCACTTCTCTCTGGAAATAACAACCCATCTTATTGGGAGGCCATACTTCGCCGATTGGAACTTCCCAGTGACATCAAGA

Fln Alignment:

uagpf_mira_c8086___IPKQYSQELFCLYAFCQTYPHPGFGDLVNKVLKACDXXXXXXXXXXXXXXXNNNPSYWEAILRRL
E9NZS7________________LSRERSRELFCSHAFCHPHPLSGFEPLVDQFLEACSGLPLSLKVFGGLLCRNTDKSYWKKQMKKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain