SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene27900

Length: 470 nt

UniGene Fasta

>uagpf_v2_unigene27900
CGTCGTGACCTTGGCTGTCACTCACTTTCTTCTACCACCGAAGGCCTGCCTGTATTTGTGCAGGAACGCAATATTCTGAGCAGGGAAAGCTATGGTGGAGCTTACAGGGTTTCCTCTTATGTCATAGCAAATGCCATTGTTTTCCTTCCATTCATGCTCATTGTTGCTCTGGTTTTCTCCATTCCTGTTTACTGGTTAGCAGGCCTAAATACCAGACCTTTGGCTTTTCTTTATTTTGTCCTGGTAATCTGGGTGGCAGTCTACAGCGCGAATTCCATGGTGGCATTTTTCAGTGCTGCTGTGCCCAATTACATAATGGGTACTACTCTCATCACGGGTTGCTTGGGCGCTTTCTTTCTTTTCTCGGGATTCTTTGTGTCCAAGAATCAGATTCCCAAGTACTGGAGGTTCGTGCATTATCTCTCCCTTTTCAAGTACCCTCTGGAGGCTCTTCTCATCAACGAGTATTG

Ace file of the UniGene uagpf_v2_unigene27900

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4687	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	ATP Binding Cassette Transporter (CrWBC1) n=1 Tax=Catharanthus roseus RepID=A7MAN9_CATRO	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	28%
Blast2go	abc transporter g family member	-	-	66%

Source	GOs	Term	Type	Identity
Blast2go	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	66%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	66%
Blast2go	membrane	GO:0016020	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Peptidase C14, ICE, catalytic subunit p20, active site	IPR016129	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL31

Fln msg: Distance to subject end: 79 aas, your sequence is shorter than subject: 156 - 676

Fln protein: RRDLGCHSLSSTTEGLPVFVQERNILSRESYGGAYRVSSYVIANAIVFLPFMLIVALVFSIPVYWLAGLNTRPLAFLYFVLVIWVAVYSANSMVAFFSAAVPNYIMGTTLITGCLGAFFLFSGFFVSKNQIPKYWRFVHYLSLFKYPLEALLINEY

Protein Length: 157

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTTCTTCTACCACCGAAGGCCTGCCTGTATTTGTGCAGGAACGCAATATTCTGAGCAGGGAAAGCTATGGTGGAGCTTACAGGGTTTCCTCTTATGTCATAGCAAATGCCATTGTTTTCCTTCCATTCATGCTCATTGTTGCTCTGGTTTTCTCCATTCCTGTTTACTGGTTAGCAGGCCTAAATACCAGACCTTTGGCTTTTCTTTATTTTGTCCTGGTAATCTGGGTGGCAGTCTACAGCGCGAATTCCATGGTGGCATTTTTCAGTGCTGCTGTGCCCAATTACATAATGGGTACTACTCTCATCACGGGTTGCTTGGGCGCTTTCTTTCTTTTCTCGGGATTCTTTGTGTCCAAGAATCAGATTCCCAAGTACTGGAGGTTCGTGCATTATCTCTCCCTTTTCAAGTACCCTCTGGAGGCTCTTCTCATCAACGAGTATTG

Fln Alignment:

uagpf_mira_c7226___SLSSTTEGLPVFVQERNILSRESYGGAYRVSSYVIANAIVFLPFMLIVALVFSIPVYWLAGLNTRPLAFLYFVLVIWVAVYSANSMVAFFSAAVPNYIMGTTLITGCLGAFFLFSGFFVSKNQIPKYWRFVHYLSLFKYPLEALLINEY
B8LL31________________AMAALTKTVSVFPKERAIIDRERAKGSYALGPYLFAKLLAEIPVGAAFPLVFGIILYPMARLHPSLLRFGTFSSIVTVESFAASAMGLTVGAMVPTTEAAMALGPSLMTVFIVFGGYYVNSENTPTVFRWIPRISLIRWAFQALCINEF

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
171		33	66		0.997461
177		66	33		0.997458
178	33			66	0.997459
181	66			33	0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain