SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene27814

Length: 385 nt

UniGene Fasta

>uagpf_v2_unigene27814
CGTCGTGACCTTGGCTGTCACTCAATCTACGTGAGATGTATGATGAAGCAATGAAGGGCGTTAAGCATAGATTGGTTCAGAAGTCCATTCCCAAAGGACTGATATTTGTGGGAGAACTACCCAATGGGGCTGATGGACATTTCTATCCCAAAATGGACCATCTGGTGTGTTTCCTGCCAGGCACTCTTGCCTTGGGGGCAACTAGAGGCCTGACAAAACAGAGAGCAATGGAACAAGGTTTAATGACTATTGAGGAACTAGAAAATTTGAAACTTGCAGAGGATCTTGCAAAAACTTGTTATGAGATGTATGGTGTGACTACCACTGGCCTTGCACCTGAAATAGCCCATTTCCATACAAAGGAATTTTATGAAGAGGGTTTGCA

Ace file of the UniGene uagpf_v2_unigene27814

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene885	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative n=1 Tax=Ricinus communis RepID=B9S125_RICCO	-	-	63%
FL-Next	sp=Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3; Arabidopsis thaliana (Mouse-ear cress).	-	-	73%
Blast2go	mannosyl-oligosaccharide -alpha-mannosidase mns3-like	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-mannosidase.	EC:3.2.1.24	-	0.0	77%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Other glycan degradation	00511		0.0	77%
Blast2go	Mannosyl-oligosaccharide 1,2-alpha-mannosidase.	EC:3.2.1.113	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	N-Glycan biosynthesis	00510	77%
Blast2go	Various types of N-glycan biosynthesis	00513	77%
Blast2go	Metabolic pathways	01100	77%

Source	GOs	Term	Type	Identity
Blast2go	root development	GO:0048364	Biological Process	77%
Blast2go	N-glycan processing	GO:0006491	Biological Process	77%
Blast2go	alpha-mannosidase activity	GO:0004559	Molecular Function	77%
Blast2go	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	GO:0004571	Molecular Function	77%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	77%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	77%
Blast2go	membrane	GO:0016020	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, family 47	IPR001382	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q93Y37

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 124 aas, your sequence is shorter than subject: 127 - 624

Fln protein: S*PWLSLNLREMYDEAMKGVKHRLVQKSIPKGLIFVGELPNGADGHFYPKMDHLVCFLPGTLALGATRGLTKQRAMEQGLMTIEELENLKLAEDLAKTCYEMYGVTTTGLAPEIAHFHTKEFYEEGL

Protein Length: 128

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTACGTGAGATGTATGATGAAGCAATGAAGGGCGTTAAGCATAGATTGGTTCAGAAGTCCATTCCCAAAGGACTGATATTTGTGGGAGAACTACCCAATGGGGCTGATGGACATTTCTATCCCAAAATGGACCATCTGGTGTGTTTCCTGCCAGGCACTCTTGCCTTGGGGGCAACTAGAGGCCTGACAAAACAGAGAGCAATGGAACAAGGTTTAATGACTATTGAGGAACTAGAAAATTTGAAACTTGCAGAGGATCTTGCAAAAACTTGTTATGAGATGTATGGTGTGACTACCACTGGCCTTGCACCTGAAATAGCCCATTTCCATACAAAGGAATTTTATGAAGAGGGTTTGCA

Fln Alignment:

uagpf_mira_c7050___LREMYDEAMKGVKHRLVQKSIPKGLIFVGELPNGADGHFYPKMDHLVCFLPGTLALGATRGLTKQRAMEQGLMTIEELENLKLAEDLAKTCYEMYGVTTTGLAPEIAHFHTKEFYEEGL
Q93Y37________________LHDMYIEAMKGVRHLLVQNSIPKGLVFVGELPYGSKGEFSPKMDHLVCFLPGTLALGATKGLTKEQALKENLLSFEDLENLKLAEDLAKTCFEMYEVTATGLAPEIAYFHTKDYTEDGL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
68	75		25		0.996481
72		25	75		0.996481
73	75	25			0.996481
78		33		66	0.997452
81	66		33		0.997452
82			66	33	0.997452
83	66	33			0.997452
85		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain