SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene25267

Length: 534 nt

UniGene Fasta

>uagpf_v2_unigene25267
CGTCGTGACCTTGGCTGTCACTCATTAGCTTTTATCCACGCCGTCGTGACCTTGGCTGTCACTCAATTATTAAATGATCAACGAGCCGCTCTTAGCTCCGAAGGTGTTAATCTGGTCCGAGTTAAACTAGATGCAATGGCCTGGGCCTGAAGATCTAATTATACGTGGCAAGATTGGTTGGTGTAATTGCAATGGTCTACAAGAAAAATGAAGGGATTTAATTGTTTCAATGGATTGCTATTGATATTCGTATTGCTCCTTCTTTCCACTACGTCCAATGGAGCTTCTGTCACTCCCCAAGAGGCCAAGCTGCTCCGAGATGAGGTTCAACAAATGTTTTATCATGCCTTTGATGGGTATATGGAACATGCTTTTCCTCTTGATGAGCTAAGGCCTTTAAGTTGTACAGGAGAAAACACACTGGGTGGCTATGCATTGACGCTTGTTGATGCATTGGATACATTGGCACTGTTTGGTGATAGGGAACGATTTACTGCTGCAGTTCAATGGCTGGGTTCAAATTTGCATTTTGAT

Ace file of the UniGene uagpf_v2_unigene25267

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9537	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01532, Glyco_hydro_47, Glycosyl hydrolase family 47	-	-	7.00005e-41	44%
FL-Next	sp=Probable alpha-mannosidase I MNS4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	77%
Blast2go	glycoside hydrolase family 47 protein	-	-	1.4013e-45	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-mannosidase.	EC:3.2.1.24	-	1.4013e-45	69%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Other glycan degradation	00511		1.4013e-45	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein N-linked glycosylation	GO:0006487	Biological Process	1.4013e-45	69%
Blast2go	alpha-mannosidase activity	GO:0004559	Molecular Function	1.4013e-45	69%
Blast2go	mitochondrion	GO:0005739	Cellular Component	1.4013e-45	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, family 47	IPR001382	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9FG93

Fln msg: Distance to subject end: 511 aas, your sequence is shorter than subject: 109 - 624

Fln protein: MKGFNCFNGLLLIFVLLLLSTTSNGASVTPQEAKLLRDEVQQMFYHAFDGYMEHAFPLDELRPLSCTGENTLGGYALTLVDALDTLALFGDRERFTAAVQWLGSNLHFD

Protein Length: 110

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTAGCTTTTATCCACGCCGTCGTGACCTTGGCTGTCACTCAATTATTAAATGATCAACGAGCCGCTCTTAGCTCCGAAGGTGTTAATCTGGTCCGAGTTAAACTAGATGCAATGGCCTGGGCCTGAAGATCTAATTATACGTGGCAAGATTGGTTGGTGTAATTGCAATGGTCTACAAGAAAA_-_ATGAAGGGATTTAATTGTTTCAATGGATTGCTATTGATATTCGTATTGCTCCTTCTTTCCACTACGTCCAATGGAGCTTCTGTCACTCCCCAAGAGGCCAAGCTGCTCCGAGATGAGGTTCAACAAATGTTTTATCATGCCTTTGATGGGTATATGGAACATGCTTTTCCTCTTGATGAGCTAAGGCCTTTAAGTTGTACAGGAGAAAACACACTGGGTGGCTATGCATTGACGCTTGTTGATGCATTGGATACATTGGCACTGTTTGGTGATAGGGAACGATTTACTGCTGCAGTTCAATGGCTGGGTTCAAATTTGCATTTTGAT

Fln Alignment:

uagpf_mira_c1224___SVTPQEAKLLRDEVQQMFYHAFDGYMEHAFPLDELRPLSCTGENTLGGYXXXXXXXXXXXXXFGDRERFTAAVQWLGSNLHFD
Q9FG93________________SVKPDEAKQLRDEVRGMFYHAFDGYMNNAFPLDELRPLSCQGEDTLGGYALTLIDSLDTLALLGDRERFTSSVEWIGKNLQFN

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
43			66	33	0.997476
44	33			66	0.997476
45	33	66			0.997476
46			66	33	0.997476
49	66			33	0.997476
50		66		33	0.997476
52	33			66	0.997476
65	66			33	0.997461
318		75		25	0.996477
321		25	75		0.996477
322	75	25			0.996477
324			66	33	0.997452
325	66		33		0.997452
327		33	66		0.997452
335	75			25	0.99649
336	75	25			0.99649
374		75		25	0.996475
375		33		66	0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain