SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19816

Length: 1968 nt

UniGene Fasta

>uagpf_v2_unigene19816
CGTCGTGACCTTGGCTGTCACTCAAAGCTTGAGAGGAAGAATTAGGAACGATGGCGAAGTATAGTCCAGAGAATGGTTTGCGTGCAGGTTACTTTGTGGACGATGGGATGGAGCAAATGAAGCTCGATCCGAGGTTGCCTCTGTTGCAGGAGGCCGATCTCAAAGACAAAATCGTTCTTCTCAGAGTCGATCACAATGTCGTCAAGAAAGGGAAAGTACTAGATCAGTACAGAATCGATGTGACTCTGCCAACTATGTACAACATAGTGGAGCGAGGTGGAAGGCTCATAATCATGAGTCACATTGGACGCCCGTACGATAAGAAGACAAAAACTATCTCTATACGTGAGGATGATTCTGTGGATGCTGTTGTTGCATATTTGCAACGCAAACTCCGCATCAAATTTGCAATTCCCCGTTTAAGTACTACTGAAAAAAATGGAATTCTGGATATTGATACCTCCATCAACTGGTTGATCCATGACCTTAAGATTCGGAAAATTGGTGGAATTTACCTACCCAATAGCCGATGGTTTGCGGGGGAGGAAGACAAAGGACAAAAGCTTGAAAGATTTGTCATTCAACTTTCGGCTCTAGCTGATGTATATGTCAATGATGCATTTGGCTCGTGGCAGCCTCATGGTTCCACGTACCATATTGCGAAATGCTTGCCCTCATATGCAGGATTGTGCATGCAGGATGAACTTTATCATGTGCAAGCAGTCTTGAATCCCACGAGGCCGTTTGTTGCAATTGTTGCTGGTGCAAAGTATGATACAAAGATTGGTCCATTAAATGAGATCTACAAGAAAGTTGATAAATTGGTTCTGGGTGGTCTCATATACAATACTTATCTATGTGCTAAATATCGAGTTAAAATTGCTGGCGTTGAGGATTCAGATATTGAACTTGCAAAAGAGCTGGTAGAACAGGATAAGACACACAAAAAAATTGTAGAGATGCAGGTGCTTGTTGAATCTGATACTCTGGATGGTAGAGTTGAAGGGCATTTTAGAACAATCAATATCAAGGACTTTGCTCCTGGCCAGACGTACAAGTATGTTGTTGATGTTGATCCCACCTCATTTGAGAAAGATGAGGTTGAACAAGCAATGAACTCAGCCAAGACAATATTTGTTAATGCTGTGATGGGACTCATGCCGCATTTCTGGCATGGCACAAGCAAAATGGATGAGGCGTTGTGACCTTGGCGCACTCAAAAATTCTTTGGAGGTGGTGATACCCTTCAGACTTTTAAAAGCCTTCATCCTCTGCTGTCGAGGCCGCATTGGACAATATCAAATACTATTTATTTACGGGAGGTGGTACTGTTTTGAAGGTTATTGAAGAGGGAGATCCAATGGGATTGGAGACTGTAAAGGCTCTTATTGACAACAAGGCAAACTATTTTAAGAGCATTCAAATGAATTGAAGCTAGCTTATGACACATGCTTTAGCGTGCAGAGTAAGGGGTTGATATCTCTCATAGGAATTGGTTAAAGACATATGCTGTTTGGTATAATACAGCCATCGTGCAGAGATAGCTGATTTAAGGCTTATATGGTAGATTTTTTGATAATTTAGTACTTTTATATTTGTAGAGGATTCCAAAGAATATAGCAGGAGAGTGTTATGTAATGTAGCTATAATGACCACAAGGGCGGCTGTGTGAGTCAGTATAAAACGTTAAAGCGTTCCTTCGCCAGTTCTTATCGCTAGTGTTTTGGGGACGTGTCAATAAAAATGTAAAACTGGTGTCATGCTACAAGACACCCCTTTCCTAGTTCTTGTTGCCTGACACATTGATGTACATAGATCCATCTTAATCCGAGTAAAACTTCTCACTGCTTAAATTTGGTCTCTCTGTGCAAAAATATGTAGTTGCATTAGTTACTACATTTGTGTTCCCAAGATATTTGGATGGCAGTCTATAAATTGTCTGCAAACTCTATGGAGACTATGTAGGGA

Ace file of the UniGene uagpf_v2_unigene19816

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16881	62/67

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoglycerate kinase n=4 Tax=Picea sitchensis RepID=A9NW50_PICSI	-	-	79%
FL-Next	sp=Phosphoglycerate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	phosphoglycerate kinase	-	-	75%

Source	InterPros	Term	Type	Identity
Sma3	Phosphoglycerate kinase	IPR001576	-	-
Sma3	Phosphoglycerate kinase, C-terminal	IPR015901	-	-
Sma3	Phosphoglycerate kinase, N-terminal	IPR015824	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLT2

Fln msg: Overlapping hits, possible frame ERROR between 1313 and 1280,

Fln protein: MAKYSPENGLRAGYFVDDGMEQMKLDPRLPLLQEADLKDKIVLLRVDHNVVKKGKVLDQYRIDVTLPTMYNIVERGGRLIIMSHIGRPYDKKTKTISIREDDSVDAVVAYLQRKLRIKFAIPRLSTTEKNGILDIDTSINWLIHDLKIRKIGGIYLPNSRWFAGEEDKGQKLERFVIQLSALADVYVNDAFGSWQPHGSTYHIAKCLPSYAGLCMQDELYHVQAVLNPTRPFVAIVAGAKYDTKIGPLNEIYKKVDKLVLGGLIYNTYLCAKYRVKIAGVEDSDIELAKELVEQDKTHKKIVEMQVLVESDTLDGRVEGHFRTINIKDFAPGQTYKYVVDVDPTSFEKDEVEQAMNSAKTIFVNAVMGLMPHFWHGTSKMDEAL*PWRTQKFFGGGDTLQTFKSLHPLLxxxxxxxxxxxxxTGGGTVLKVIEEGDPMGLETVKALIDNKANYFKSIQMN*

Protein Length: 462

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGCTTGAGAGGAAGAATTAGGAACG_-_ATGGCGAAGTATAGTCCAGAGAATGGTTTGCGTGCAGGTTACTTTGTGGACGATGGGATGGAGCAAATGAAGCTCGATCCGAGGTTGCCTCTGTTGCAGGAGGCCGATCTCAAAGACAAAATCGTTCTTCTCAGAGTCGATCACAATGTCGTCAAGAAAGGGAAAGTACTAGATCAGTACAGAATCGATGTGACTCTGCCAACTATGTACAACATAGTGGAGCGAGGTGGAAGGCTCATAATCATGAGTCACATTGGACGCCCGTACGATAAGAAGACAAAAACTATCTCTATACGTGAGGATGATTCTGTGGATGCTGTTGTTGCATATTTGCAACGCAAACTCCGCATCAAATTTGCAATTCCCCGTTTAAGTACTACTGAAAAAAATGGAATTCTGGATATTGATACCTCCATCAACTGGTTGATCCATGACCTTAAGATTCGGAAAATTGGTGGAATTTACCTACCCAATAGCCGATGGTTTGCGGGGGAGGAAGACAAAGGACAAAAGCTTGAAAGATTTGTCATTCAACTTTCGGCTCTAGCTGATGTATATGTCAATGATGCATTTGGCTCGTGGCAGCCTCATGGTTCCACGTACCATATTGCGAAATGCTTGCCCTCATATGCAGGATTGTGCATGCAGGATGAACTTTATCATGTGCAAGCAGTCTTGAATCCCACGAGGCCGTTTGTTGCAATTGTTGCTGGTGCAAAGTATGATACAAAGATTGGTCCATTAAATGAGATCTACAAGAAAGTTGATAAATTGGTTCTGGGTGGTCTCATATACAATACTTATCTATGTGCTAAATATCGAGTTAAAATTGCTGGCGTTGAGGATTCAGATATTGAACTTGCAAAAGAGCTGGTAGAACAGGATAAGACACACAAAAAAATTGTAGAGATGCAGGTGCTTGTTGAATCTGATACTCTGGATGGTAGAGTTGAAGGGCATTTTAGAACAATCAATATCAAGGACTTTGCTCCTGGCCAGACGTACAAGTATGTTGTTGATGTTGATCCCACCTCATTTGAGAAAGATGAGGTTGAACAAGCAATGAACTCAGCCAAGACAATATTTGTTAATGCTGTGATGGGACTCATGCCGCATTTCTGGCATGGCACAAGCAAAATGGATGAGGCGTTGTGACCTTGGCGCACTCAAAAATTCTTTGGAGGTGGTGATACCCTTCAGACTTTTAAAAGCCTTCATCCTCTGCTGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACGGGAGGTGGTACTGTTTTGAAGGTTATTGAAGAGGGAGATCCAATGGGATTGGAGACTGTAAAGGCTCTTATTGACAACAAGGCAAACTATTTTAAGAGCATTCAAATGAATTGA___AGCTAGCTTATGACACATGCTTTAGCGTGCAGAGTAAGGGGTTGATATCTCTCATAGGAATTGGTTAAAGACATATGCTGTTTGGTATAATACAGCCATCGTGCAGAGATAGCTGATTTAAGGCTTATATGGTAGATTTTTTGATAATTTAGTACTTTTATATTTGTAGAGGATTCCAAAGAATATAGCAGGAGAGTGTTATGTAATGTAGCTATAATGACCACAAGGGCGGCTGTGTGAGTCAGTATAAAACGTTAAAGCGTTCCTTCGCCAGTTCTTATCGCTAGTGTTTTGGGGACGTGTCAATAAAAATGTAAAACTGGTGTCATGCTACAAGACACCCCTTTCCTAGTTCTTGTTGCCTGACACATTGATGTACATAGATCCATCTTAATCCGAGTAAAACTTCTCACTGCTTAAATTTGGTCTCTCTGTGCAAAAATATGTAGTTGCATTAGTTACTACATTTGTGTTCCCAAGATATTTGGATGGCAGTCTATAAATTGTCTGCAAACTCTATGGAGACTATGTAGGGA

Fln Alignment:

Contig19816___MAKYSPENGL-RAGYFVDDGMEQMKL-DPRLPLLQEADLKDKIVLLRVDHNVVKKGKVLDQYRIDVTLPTMYNIVERGGRLIIMSHIGRPYDKKTKTISIREDDSVDAVVAYLQRKLRIKFAIPRLSTTEKNGILDIDTSINWLIHDLKIRKIGGIYLPNSRWFAGEEDKGQKLERFVIQLSALADVYVNDAFGSWQPHGSTYHIAKCLPSYAGLCMQDELYHVQAVLNPTRPFVAIVAGAKYDTKIGPLNEIYKKVDKLVLGGLIYNTYLCAKYRVKIAGVEDSDIELAKELVEQDKTHKKIVEMQVLVESDTLDGRVEGHFRTINIKDFAPGQTYKYVVDVDPTSFEKDEVEQAMNSAKTIFVNAVMGLMPHFWHGTSKMDEAL*PWRT-QKFFGGGDTLQTFKSLHPLLSRPxxxxxxxxxYLFTGGGTVLKVIEEGDPMGLETVKALIDNK
B8LLT2________________MAPYGQENGLTRIGYSVDDGLENDKIADPRLPLLPDADLKDKIVLLRVDHNVVKKGEILDQYRIDVTLPTLYNITERGGRPILMTHVGRPYDKKNKTVTIRKDESVDAIVAYLQRKLRIKFVVPKFNYDEKDGILDIDTSINWLITDLRKRKIGGIYLPNTRWFAGEEDKGEKLERFAIQLAGLADVFVNDAFGSWQPHGSTYHITKYLPSYAGLCMQDELYHVEAVLNPTRPFIAIVAGSKYDTKIGPLNQIYKKVDKLVLGGVIYNTYLCAKYGVKIAGVQDSDIELAKELVEQDKTQGKIVEMDILVETDTLSGRFEGKYRAVNVKDFAPGKTYNYIVDIDPLSLESEDVLQALNSAKTIFVNAVMGFMPNFWHGTSKLDEVIDNNQSAKKYFGGGDTLQAFKSLHPNLYQAxxxxxxxxxYLFTGGGTVLKVIEEGDSMGLDTVRALIENK

SNPs (tot: 113)

Position	A %	C %	G %	T %	Probability
50		12	87		0.999964
53		12	87		0.999964
170	84	15			1.0
171	68		31		1.0
176	15			84	1.0
178		15		84	1.0
182		84	15		1.0
183	84		15		1.0
184		15	84		1.0
185	84			15	1.0
189	15		84		1.0
190	84	15			1.0
385	87		12		0.992554
386	87			12	0.992554
389		87		12	0.992554
390	87		12		0.992554
392	87	12			0.992554
395		85		14	0.993533
396		85	14		0.993533
401		85	14		0.993533
402	85			14	0.993533
403	85	14			0.993533
405		16		83	0.994512
510	66	33			1.0
511			28	71	1.0
512			14	85	0.993533
513			28	71	1.0
515		85		14	0.993533
517			14	85	0.993533
518	71			28	1.0
519		71	28		1.0
520		71	28		1.0
521		85		14	0.993533
522	57		14	28	1.0
523	57		42		1.0
524		14		85	0.993533
525	57	28		14	1.0
526	28		71		1.0
527		85		14	0.993533
528		71		28	1.0
529	14	28	57		1.0
530	85	14			0.993533
532		14	71		0.984337
533	14		85		0.993533
538		87		12	0.992554
559	85	14			0.993533
560	85			14	0.993533
561	85			14	0.993533
562	85	14			0.993533
631		14	85		0.993533
634	85			14	0.993533
636	14	85			0.993533
640	85			14	0.993533
645			14	85	0.993533
646		85		14	0.993533
738	88	11			0.999937
941	80		20		0.995493
1287		50		50	1.0
1289	50			50	1.0
1290		25	75		0.996473
1291	25		75		0.996473
1292		75		25	0.996473
1293		75	25		0.996473
1294	25		50	25	0.995533
1295		80		20	0.995493
1296	40	20	40		1.0
1297			20	80	0.995493
1298		40		60	1.0
1299			80	20	0.995493
1301	60			20	0.99255
1303	60	20		20	0.99255
1304	40	20	20	20	0.994159
1307	80		20		0.995493
1308	20	20			0.99255
1309			20	80	0.995493
1312	80			20	0.995493
1313	80		20		0.995493
1317	20			80	0.995493
1318	80	20			0.995493
1319		14		85	0.993533
1320		14	14	71	0.984337
1321	14			85	0.993533
1322	85	14			0.993533
1323			14	85	0.993533
1325			14	85	0.993533
1328		14	85		0.993533
1329			85	14	0.993533
1330			85	14	0.993533
1331	85		14		0.993533
1333		14	85		0.993533
1336			85	14	0.993533
1337		14		85	0.993533
1352	11	11	77		0.968132
1353			11	88	0.923564
1355	88	11			0.923564
1356			11	88	0.923564
1360	88	11			0.923564
1361		11	88		0.923564
1362	88			11	0.923564
1363			88	11	0.923564
1366	88	11			0.923564
1367			88	11	0.923564
1368	88		11		0.923564
1372	90		10		0.90298
1374		10		90	0.90298
1377	10		90		0.90298
1379		10		90	0.90298
1381			90	10	0.90298
1385	75			16	0.99999
1392	83			16	0.999991
1675		87		12	0.992554
1680			87	12	0.992554
1683		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain