SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19586

Length: 767 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene19586 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15936	11/12

Source	Descriptions	Term	Type	Identity
AutoFact	NAC protein 1 n=2 Tax=Elaeis guineensis RepID=Q2XQF5_ELAGV	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	nac protein 1	-	-	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	No apical meristem (NAM) protein	IPR003441	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZG8

Fln msg: Separated hits, possible frame ERROR between 408 and 429, STOP codon was not found. Distance to subject end: 8 aas, your sequence is shorter than subject: 256 - 387

Fln protein: RRDLGCHSITHEHRRPHVNRSAKKKGSLRLDDWVLCRIYNKKSSAEKLAKEQEWSSEAAMEPSHEEIDQKVPGILPTGNTIMNSNVVPWLSFKDSTKSAPSPNCRTISNHDSRTSAITSMSYNSNFEQNLNISNAxxxxxxxxIPGLAPFFNPMTNHRTNYDSADLIPPILLTDSSCSMQSSHDLKSDKEEVQSSCRLEELMQQQRQQQQENAGLNQSMFTFGFESLQNPFPQLDQIQPPSSNDPFQDYLASLTAP

Protein Length: 257

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTACGCATGAACACCGCCGTCCTCATGTCAATAGATCTGCAAAGAAGAAGGGCAGCTTAAGGTTGGATGATTGGGTACTTTGTCGAATATACAACAAGAAGAGCAGTGCCGAGAAGTTAGCTAAGGAGCAAGAGTGGTCCTCAGAAGCAGCAATGGAACCATCCCACGAAGAAATTGATCAAAAGGTGCCAGGAATACTGCCCACTGGGAATACTATAATGAACTCGAACGTTGTGCCTTGGCTGTCTTTCAAAGATTCGACCAAATCTGCCCCCTCTCCGAATTGCAGAACAATCTCTAACCATGATTCAAGAACTTCTGCCATTACTTCCATGAGCTACAACTCAAACTTTGAGCAGAATTTGAACATTTCAAATGCCCGxxxxxxxxxxxxxxxxxxxxxCATTCCAGGACTTGCCCCATTTTTCAACCCTATGACTAATCACAGGACAAATTACGATTCAGCAGATTTAATTCCTCCTATTCTGCTCACCGATTCAAGTTGTTCCATGCAATCGTCGCATGATCTTAAATCCGATAAAGAAGAAGTGCAGAGCAGCTGTAGATTGGAAGAACTGATGCAGCAACAGCGGCAGCAGCAGCAGGAGAATGCTGGTTTGAACCAATCAATGTTCACCTTTGGCTTCGAGAGTCTGCAAAACCCtTTCCCGCAGTTAGACCAAATACAGCCTCCCTCCAGCAATGATCCTTTCCAAGATTACTTAGCCAGCCTCACAGCTCCA

Fln Alignment:

Contig19586___ITHEHRRPHVNRSAKKKGSLRLDDWVLCRIYNKKSSAEKLAKEQ-EWSSEAAMEPSHEEIDQKVPGILPTGNTIMNSNVV-PWLSFKDSTKSAPSPNCRTISNHDSRTSAITSMSYNSN--FEQNLNISNARxxxxxxxIPGLAPFFNPMTNHRTNYDSADLIPPILLTDSSCSMQSSHDLKSDKEEVQSSCRLEELMXXXXXXXQENAGLNQSMFTFGFESLQNPFPQLDQIQPPSSNDPFQDYLASLTAP
A9NZG8________________IMHEYRLADVNRSAKKKGSLRLDDWVLCRIYNKKSSAEKLAKEQKEWSSEEAMEQFHEEIDEKVPGILPTGNTIMNSSIEHSERTSQDSTISAPSPNCRTASNHDSRASAITSLSYNSNPIFEQNLNLSNARxxxxxxxIPELVPFFSSMNNHRTNYDSADLIPPILLTDSSCSMQSSHDLKSEKEEVQSSFRLEELM---QQQQQENAGLNQQMFSFGFESLQNPFPSLDQIQPPTNNDPFQDYLASLTVP

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
251		11	88		0.923564
252	11			88	0.923564
254	88	11			0.923564
255		11	88		0.923564
256	11	88			0.923564
259	88		11		0.923564
260	88			11	0.923564
261		11		88	0.923564
263		11	88		0.923564
266		11	88		0.923564
341	75	25			1.0
344		25	75		1.0
348			75	25	1.0
349		75		25	1.0
350		75	25		1.0
351	75		25		1.0
359			75	25	1.0
362			75	25	1.0
514	75		25		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
139	151	CTG CTG CTG CTG C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain