SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19268

Length: 559 nt

UniGene Fasta

>uagpf_v2_unigene19268
CGTCGTGACCTTGGCTGTCACTCAAATATTCAATAAATATGACTTGTACAGTAAGAGTAAGGTCAGAATTGATGTGGAGGCCGTGAAGCCATATTACCAATCACTTATCGACAAGTACTTCCCCTCCAAATTGAGATGGTGACTACGTCGTGACCTTGGCTGTCACTCGTGATTATAGATAGCTATGGATACTCTGTGGGATTGGATGGCCTCAATAAGGATATTATTGGTGTTATTAGAGCTTGATATACTCTAGTAATACAGTGGGTTGGATTAGCTTTTTATTAGGAGGGATTATGTCAAGAATATCAATGTCAAGTGGGGTGAATTAGATTTTAATTAGGAAGCATAAACTCTAGAGTGAATTAGCCTGGGTAATGGGGACTGGATTGGACTTGCTAGGGATGATAAGGCAATGATAAGGCCATGTGAAGATTCTCACGGACTTTAATTAGGATTGATTATGTCAATGAACTATTTCAGTAATTTATTACGAATAAAGTGGATTAGATTTTTATTTGGATGAGCATGATATTTCAGGATTTATGAGTAATAAAGT

Ace file of the UniGene uagpf_v2_unigene19268

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21794	9/10

Source	Descriptions	Term	Type	Identity
AutoFact	Myo-inositol oxygenase n=1 Tax=Eucalyptus grandis RepID=B3VDZ0_EUCGR	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	myo-inositol oxygenase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Inositol oxygenase.	EC:1.13.99.1	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Ascorbate and aldarate metabolism	00053		0.0	83%
Blast2go	Inositol phosphate metabolism	00562		0.0	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	syncytium formation	GO:0006949	Biological Process	0.0	83%
Blast2go	inositol oxygenase activity	GO:0050113	Molecular Function	0.0	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Inositol oxygenase	IPR007828	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU49

Fln msg: your sequence is shorter than subject: 47 - 316

Fln protein: VVTLAVTQIFNKYDLYSKSKVRIDVEAVKPYYQSLIDKYFPSKLRW*

Protein Length: 48

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATATTCAATAAATATGACTTGTACAGTAAGAGTAAGGTCAGAATTGATGTGGAGGCCGTGAAGCCATATTACCAATCACTTATCGACAAGTACTTCCCCTCCAAATTGAGATGGTGA___CTACGTCGTGACCTTGGCTGTCACTCGTGATTATAGATAGCTATGGATACTCTGTGGGATTGGATGGCCTCAATAAGGATATTATTGGTGTTATTAGAGCTTGATATACTCTAGTAATACAGTGGGTTGGATTAGCTTTTTATTAGGAGGGATTATGTCAAGAATATCAATGTCAAGTGGGGTGAATTAGATTTTAATTAGGAAGCATAAACTCTAGAGTGAATTAGCCTGGGTAATGGGGACTGGATTGGACTTGCTAGGGATGATAAGGCAATGATAAGGCCATGTGAAGATTCTCACGGACTTTAATTAGGATTGATTATGTCAATGAACTATTTCAGTAATTTATTACGAATAAAGTGGATTAGATTTTTATTTGGATGAGCATGATATTTCAGGATTTATGAGTAATAAAGT

Fln Alignment:

Contig19268___QIFNKYDLYSKSKVRIDVEAVKPYYQSLIDKYFPSKLRW
A9NU49________________KIFNKYDLYSKSKVRVDVEEVKPYYQSLIDKYFPSKLRW

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
147	33		66		0.997452
152		33	66		0.997452
153	66			33	0.997452
154		66		33	0.997452
156		33		66	0.997452
157	33			66	0.997452
158	33		66		0.997452
159	33		66		0.997452
164	33	66			0.997452
166	33	66			0.997452
169		66	33		0.997452
170	33		66		1.0
208		20		80	0.995493
210			80	20	0.995493
212		80	20		0.995493
214		80	20		0.995493
216	80	20			0.995493
217		20		80	0.995493
218	80			20	0.995493
219	80			20	0.995493
222	80	20			0.995493
224	80		20		0.995493
226		20		80	0.995493
229	20			80	0.995493
256	85	14			0.993533
259	85	14			0.993533
260	85		14		0.993533
264	85	14			0.993533
265			85	14	0.993533
269		14	85		0.993533
271			14	85	0.993533
272			85	14	0.993533
273		14	85		0.993533
275		14		85	0.993533
277	85	14			0.993533
278	14		85		0.993533
353	88		11		0.923564
393		11	88		0.923564
395	88			11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain