SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18899

Length: 595 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18899

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8893	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 pdb\|2IX6\|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 pdb\|2IX6\|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, A	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	glutaryl- dehydrogenase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acyl-CoA dehydrogenase.	EC:1.3.99.3	-	0.0	87%

Source	KEGGs	Term	Type	Identity
Blast2go	Fatty acid metabolism	00071		87%
Blast2go	Valine, leucine and isoleucine degradation	00280		87%
Blast2go	beta-Alanine metabolism	00410		87%
Blast2go	Propanoate metabolism	00640		87%
Blast2go	Metabolic pathways	01100		87%
Blast2go	Biosynthesis of secondary metabolites	01110		87%
Blast2go	Acyl-CoA oxidase.	EC:1.3.3.6	-	87%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid metabolism	00071	87%
Blast2go	alpha-Linolenic acid metabolism	00592	87%
Blast2go	Biosynthesis of unsaturated fatty acids	01040	87%
Blast2go	Biosynthesis of plant hormones	01070	87%
Blast2go	Metabolic pathways	01100	87%

Source	GOs	Term	Type	Identity
Blast2go	short-chain fatty acid metabolic process	GO:0046459	Biological Process	87%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	87%
Blast2go	fatty acid beta-oxidation	GO:0006635	Biological Process	87%
Blast2go	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	87%
Blast2go	acyl-CoA dehydrogenase activity	GO:0003995	Molecular Function	87%
Blast2go	acyl-CoA oxidase activity	GO:0003997	Molecular Function	87%
Blast2go	peroxisome	GO:0005777	Cellular Component	87%
Blast2go	cytosol	GO:0005829	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Acyl-CoA oxidase/dehydrogenase, central domain	IPR006091	-	-
Sma3	Acyl-CoA dehydrogenase, conserved site	IPR006089	-	-
Sma3	Acyl-CoA dehydrogenase, N-terminal	IPR006092	-	-
Sma3	Acyl-CoA oxidase/dehydrogenase, type 1	IPR006090	-	-
Sma3	Acyl-CoA dehydrogenase/oxidase, N-terminal	IPR013786	-	-
Sma3		IPR013764	-	-

Full-Lengther Next Prediction

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
88	83	16			0.994512
92			16	83	0.994512
93			16	83	0.994512
94		16		83	0.994512
97	83			16	0.994512
98	83	16			0.994512
100		16	83		0.994512
101	83			16	0.994512
102	83	16			0.994512
103	16		83		0.994512
206			66	33	1.0
207		33		66	1.0
208	66		33		1.0
210		66	33		1.0
211	33		66		1.0
213		33	66		1.0
214	66			33	1.0
218		33	66		1.0
224		22		66	0.999999
225	77			22	0.999999
227	22		66		0.999999
230	88	11			0.923564
231	11			88	0.923564
244			10	90	0.90298
246			10	90	0.90298
249	90			10	0.90298
252	90	10			0.90298
253	90			10	0.90298
254	90		10		0.90298
255			90	10	0.90298
256	90	10			0.90298
258	90	10			0.90298
259			90	10	0.90298
373		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain