SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18732

Length: 1293 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18732

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17725	37/40
SustainPine v2.0	sp_v2.0_unigene25558	2/40

Source	Descriptions	Term	Type	Identity
AutoFact	Endo-1,3-1,4-beta-d-glucanase, putative n=1 Tax=Ricinus communis RepID=B9SFP3_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	endo- - -beta-d-	-	-	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQD2

Fln msg:

Fln protein: MAGPQCCESPPQLDPGAGIGRVETFQHLSAYVTASPDAKAGVILISDVFGFEAPKLRKLADKVAAAGYFVVVPDFFYGDPFVLGSADNPFAGVQDWLKRHETAKAFEDCTKVVEVLKSRGISAIGAAGFCWGAKVVVELAKGEVLKAGVLLHPSLLTVDDIKVVKAPLAILGAEIDKSSPPELMQQFGAILSAKPEVDSFVKIYPGVAHGWTVRYDENDEVAVKNAEEAHVDMLEWFNKYLN*

Protein Length: 244

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCGTTTCCCTTGGTGAAATTGAACACGGAACGGCTCTAGATATATACATAAGCCCTCTTTAACACAACTAGCTGTGTAAATAGCCTTGAACAAAGTGGAGGGTGAAATACAAATCTAATAACAGAGGAGATATTGAGAT_-_ATGGCCGGTCCTCAGTGCTGCGAGTCGCCTCCTCAACTAGATCCAGGTGCGGGTATTGGACGGGTGGAGACATTCCAACATCTGTCGGCCTACGTTACCGCTTCTCCCGACGCCAAGGCCGGCGTCATTCTCATTTCCGACGTCTTTGGATTTGAGGCTCCAAAATTGAGGAAGCTTGCTGACAAAGTAGCAGCAGCTGGGTACTTTGTCGTCGTTCCTGACTTCTTTTATGGGGATCCATTCGTACTAGGCAGTGCTGACAATCCTTTTGCTGGGGTTCAAGATTGGCTAAAACGTCATGAGACAGCCAAGGCATTTGAGGACTGCACCAAAGTTGTAGAGGTTTTGAAAAGCAGAGGCATATCTGCTATTGGTGCAGCTGGCTTTTGCTGGGGAGCGAAAGTGGTAGTGGAGCTAGCTAAGGGAGAAGTTCTGAAAGCAGGAGTGTTGTTACATCCATCACTTTTAACAGTTGATGATATTAAAGTGGTTAAAGCACCACTTGCAATACTGGGGGCTGAAATTGACAAAAGCAGTCCACCTGAACTCATGCAGCAGTTTGGAGCAATTTTGTCTGCAAAACCAGAGGTAGATAGCTTTGTCAAAATTTATCCTGGGGTTGCTCATGGTTGGACTGTAAGATACGATGAGAATGATGAAGTTGCCGTGAAAAATGCTGAAGAGGCTCATGTCGATATGCTAGAATGGTTTAATAAATATCTGAATTGA___TAATAGGCATCTATGTATTAGAACATATTTATGTTCATTGTCTGGATGGGATCTCTTTTATTTATTACTGCAATACAAAATAATATATACATGCCACTCATGACAAGGTGTACTTATTTTCCAGTAGAATCCCTTAAAAAAGGTATTTCAGTTGACTTCTTCTGGTTTTTGCCCTGATATTTGTTTAATTTCTCCATTTTTGTCTTTCAAAAGATGATCTATGAAATGTCTTGAAAGCAAGGATAATATCGTGTGGGAATCTAGGATAGTAATAAACACTGTAAATTATATATTGCACGAGAAATTGATTTTCACTGAACTGGGATTTTGTTCTGGTAATAACCATTGTTTCACAAGGTTGATGTTCTATTAGTTTTTCATCTATATTTACGGTACTAAG

Fln Alignment:

Contig18732___MAGPQCCESPPQLDPGAGIGRVETFQHLSAYVTASPDAKAGVILISDVFGFEAPKLRKLADKVAAAGYFVVVPDFFYGDPFVLGSADNPFAGVQDWLKRHETAKAFEDCTKVVEVLKSRGISAIGAAGFCWGAKVVVELAKGEVLKAGVLLHPSLLTVDDIKVVKAPLAILGAEIDKSSPPELMQQFGAILSAKPEVDSFVKIYPGVAHGWTVRYDENDEVAVKNAEEAHVDMLEWFNKYLN
C0PQD2________________MAGPQCCESAPQLHPGVGIGRVETFEHLSVYVTASPDAKAAVILISDIFGFEAPNLRKLADKVAAAGYFVVVPDFFYGDPFVPGSAENPLAGFQDWIKSHGPAKGFDDSTKVIEVLKSRGISAIGAAGFCWGAKVVVELTKGEVLKAGVLLHPSFVTVDDIKVVKAPLAILGAEIDKSSPPELVEQFGAILSAKPEVDSFVKIYPGVAHGWTVRYDENDEVAVKNAEEAHVKMLEWLNKYLN

SNPs (tot: 59)

Position	A %	C %	G %	T %	Probability
203	87		12		0.992554
204	87			12	0.992554
206			12	87	0.992554
207	87			12	0.992554
213	87			12	0.992554
214			87	12	0.992554
219			87	12	0.992554
221			87	12	0.992554
222		12		87	0.992554
225	12			87	0.992554
301	75		25		1.0
412	25		75		0.996473
454		25		75	0.996473
456			75	25	0.996473
458			25	75	0.996473
459	75			25	0.996473
460	75		25		0.996473
462	75	25			0.996473
464			75	25	0.996473
467		75	25		0.996473
468	75	25			0.996473
471	66			33	0.997452
472		33	66		0.997452
476			66	33	0.997452
478	33	66			0.997452
490		25	75		0.996473
492	75			25	0.996473
501	75			25	0.996473
502	75			25	0.996473
503	75		25		0.996473
505		25		75	0.996473
510			66	33	0.997452
511	66	33			0.997452
512	33		66		0.997452
540	75	25			0.996473
541			25	75	0.996473
543		25	75		0.996473
549		25	75		0.996473
556			25	75	0.996473
558		25		75	0.996473
559	25		75		0.996473
778	88	11			0.999937
782		10	5	85	0.999793
783	85		15		1.0
786		85	10	5	0.999793
789	10		90		0.999898
790		10	85	5	0.999793
791			90	10	0.999898
793		5	10	85	0.999793
797		90	10		0.999898
798	90	10			0.999898
799	10			90	0.999898
800		10	90		0.999898
801			90	10	0.999898
802		10		90	0.999898
803	10			90	0.999898
916	27		72		1.0
1059	16			83	0.994512
1060	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain