SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18500

Length: 810 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18500

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6805	31/34

Source	Descriptions	Term	Type	Identity
AutoFact	replication factor C subunit 2/4 [Arabidopsis thaliana] gb\|AAL07059.1\| putative replication factor [Arabidopsis thaliana] gb\|AAL32715.1\| Similar replication factor C, 37-kDa subunit [Arabidopsis thaliana] gb\|AAM61276.1\| putative replication factor [Arabid	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	replication factor c subunit	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed DNA polymerase.	EC:2.7.7.7	-	0.0	88%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	88%
Blast2go	Pyrimidine metabolism	00240	88%
Blast2go	Metabolic pathways	01100	88%

Source	GOs	Term	Type	Identity
Blast2go	DNA replication	GO:0006260	Biological Process	88%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	88%
Blast2go	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	88%
Blast2go	DNA clamp loader activity	GO:0003689	Molecular Function	88%
Blast2go	ATP binding	GO:0005524	Molecular Function	88%
Blast2go	nucleolus	GO:0005730	Cellular Component	88%
Blast2go	DNA replication factor C complex	GO:0005663	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Replication factor C, C-terminal domain	IPR013748	-	-
Sma3	Helicase/UvrB domain	IPR006935	-	-

Full-Lengther Next Prediction

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
185		33		66	0.997452
187		33	66		0.997452
190	33		66		0.997452
201	60	40			1.0
204	80	20			0.995493
205		80	20		0.995493
206		80		20	0.995493
207	60		20		0.99255
208	80			20	0.995493
209	60	20		20	0.99255
210		20	80		0.995493
211			80	20	0.995493
212	60	20		20	0.99255
213			80	20	0.995493
215		20		80	0.995493
216	16		66	16	0.988813
217		16	83		0.994512
220	16	83			0.994512
221	83			16	0.994512
222	83	16			0.994512
223	16			83	0.994512
291			14	85	0.993533
292			85	14	0.993533
293	85	14			0.993533
295			85	14	0.993533
299	85	14			0.993533
302		85		14	0.993533
303	85		14		0.993533
306	85		14		0.993533
310		85		14	0.993533
311	85	14			0.993533
332	91			8	0.999766
350	4	79		16	1.0
471	7			89	0.998606
474			3	89	0.998606

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain