SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18457

Length: 662 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18457

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8081	42/44

Source	Descriptions	Term	Type	Identity
AutoFact	pfam02365, NAM, No apical meristem (NAM) protein	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	nac protein 1	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	0.0	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
116	81	18			0.999994
117			81	18	0.999994
187		8	70		1.0
190		8		91	0.999766
191		91	8		0.999766
193	91		8		0.999766
195		8		91	0.999766
196		8		91	0.999766
197		91		8	0.999766
198		91		8	0.999766
199	91		8		0.999766
201	91	8			0.999766
204		88		11	1.0
207	84	7	3	3	0.99801
208			92	7	0.999664
210		3	88	7	0.999079
216		7	92		0.999664
315	88			11	1.0
317		88	11		1.0
318		94	5		0.998744
319		5		94	0.998744
321		91	8		1.0
322			88	8	0.999999
323		11	85		1.0
325		8	91		1.0
326			88	11	1.0
360	94		5		0.998894
361			94	5	0.998894
362	94	5			0.998894
364		94		5	0.998894
365			5	94	0.998894
366	5	94			0.998894
368		5		94	0.998894
371	88	5	5		0.982716
373		5		94	0.998578
374	88	5		5	0.982716
375			11	88	1.0
377		94	5		0.998578
379		11		88	1.0
382	5		2	91	0.99441

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain