SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17712

Length: 733 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17712

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7511	15/16

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	tetratricopeptide repeat domain-containing protein	-	-	2.8026e-45	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	2.8026e-45	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	2.8026e-45	78%

Source	InterPros	Term	Type	Identity
Sma3	RNA-processing protein, HAT helix	IPR003107	-	-
Sma3	Tetratricopeptide TPR-3	IPR011716	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

SNPs (tot: 70)

Position	A %	C %	G %	T %	Probability
260	66		33		0.997452
313		66		33	0.997452
338	66		33		0.997452
340		25		75	0.996473
342		75		25	0.996473
343	75	25			0.996473
346	75			25	0.996473
349		25		75	0.996473
350		25	75		0.996473
351	75			25	0.996473
355	75	25			0.996473
356	75			25	0.996473
358	75			25	0.996473
359		25	75		0.996473
360	20	20	60		0.99255
361	60	20	20		0.99255
364	80		20		0.995493
365			80	20	0.995493
369		20	80		0.995493
372		40		60	1.0
373		80	20		0.995493
374			20	80	0.995493
376	80			20	0.995493
382	28		57	14	1.0
383			28	28	1.0
385	14		28		1.0
386	71			28	1.0
389	71	28			1.0
390	71	28			1.0
391	71			28	1.0
395		40	60		1.0
396	60			40	1.0
397		60	40		1.0
400	40	60			1.0
403	60			40	1.0
406			20	60	0.99255
408		16		83	0.994512
409			16	83	0.994512
411		16		83	0.994512
414			16	83	0.994512
417		16		83	0.994512
418			83	16	0.994512
419		83		16	0.994512
421	83		16		0.994512
425	83		16		0.994512
426		83		16	0.994512
427		16		83	0.994512
428	16		83		0.994512
430	83			16	0.994512
431		16	83		0.994512
432	11	88			0.923564
433			11	88	0.923564
434	66		22	11	0.999999
435		77	22		0.999999
436		88	11		0.923564
440		11		88	0.923564
442	88			11	0.923564
443		88		11	0.923564
444	88		11		0.923564
445			11	88	0.923564
447	88			11	0.923564
449	88			11	0.923564
450		11	88		0.923564
451	11		88		0.923564
453		11	88		0.923564
454	11			88	0.923564
465		77		22	0.999999
492			22	77	0.999999
637	81		18		0.999994
688		90		10	0.90298

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain