SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17681

Length: 1370 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17681

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8514	38/38

Source	Descriptions	Term	Type	Identity
AutoFact	Os08g0486200 protein n=3 Tax=Oryza sativa RepID=Q6ZDR7_ORYSJ	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	protein	-	-	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	94%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
67	33	33		33	0.997753
70		33		66	0.997452
72		66		33	0.997452
73	66		33		0.997452
75		33	66		0.997452
76		33		66	0.997452
77		66		33	0.997452
78	66			33	0.997452
80			33	66	0.997452
82	60		20		0.99255
83		60		40	1.0
84		80	20		0.995493
85	60		20	20	0.99255
86	60	20		20	0.99255
87	80		20		0.995493
88	80	20			0.995493
89		20	60	20	0.99255
91	20			80	0.995493
95	80		20		0.995493
98		80	20		0.995493
99	80			20	0.995493
101	20	80			0.995493
170	70			30	1.0
173	70			30	1.0
176		70		30	1.0
177		30		70	1.0
178		70		30	1.0
180		70	30		1.0
183	70			30	1.0
192		90		10	0.90298
344		13		86	0.999973
345	86		13		0.999973
358		15		84	0.999986
361			81	18	0.999994
364		11		88	0.923564
366		11		88	0.923564
368	11			88	0.923564
682			10	90	0.90298
684		11		88	0.923564
909		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain