SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17656

Length: 2033 nt

UniGene Fasta

>uagpf_v2_unigene17656
CGTCGTGACCTTGGCCGTCGTGACCTTGGCTGTCACTCAATCATTGTCCTTGCTCCACAACTGCGGCTGCGTCTTCAGATCTGTTCGTTACATCTCGGCGGTTGCGTGTTCGAGCCTCTACGCTCTCTGCGCGTCACATTTTCTCACGGTAGAAACCAACATGGGAGAATTGAAGGAAAGCGACACTTACCAGGAAGAACTCCTTGACTATGAAGAAGAAGATGTTGCACAGGAATCAGTTGCAGCAAGGGGAGCTGGTGAAACTGTGAAAAAAGGTTATGTTGGCATTCATAGTTCAGGCTTCAGGGATTTTCTTCTGAAACCAGAGTTACTTCGTGCAATTGTAGACTCTGGATTTGAACATCCGTCAGAAGTACAACACGAGTGTATTCCCCAAGCAATCCTTGGGATGGATGTAATTTGCCAGGCAAAGTCTGGAATGGGGAAGACTGCTGTTTTTGTACTATCAACACTGCAGCAGATTGAACCTGTTGCAGGACAAGTTGCTGCTCTTGTCCTGTGTCATACTCGAGAATTGGCATATCAGATATGCCATGAATTCGAAAGGTTTATTACCTACTTGACAGACTTGAAAGTTGCTGTATTCTATGGGGGTGTAAATATCAAAACACATAAATCATTACTAAAAAATGAATGCCCCCATATAGTTGTTGGAACCCCTGGAAGGATACTGCAATTAGCAAAAGAGAAAGATCTGAATCTAAAAAATGTCCGGCATTTTATTCTGGATGAATGTGACAGGATGCTAGAATCTCTTGACATGCGGAAAGATGTCCAGGATATTTTCAAGATGACCCCTCATGACAAGCAAGTAATGATGTTCTCAGCCACACTGAGCAAGGAAATTCGGCCTGTCTGCAAAAGATTTATGCAAGATCCTATGGAGATATACGTTGATGATGAGGCAAAGTTGACACTTCATGGACTAGTTCAGCACTACATCAAGTTGAGTGAGCTGGAGAAGAACCGTAAATTGAATGATTTGCTCGATGCGCTGGACTTCAACCAAGTGGTGATATTTGTTAAGAGCGTGAACAGAGCTGCGGAGCTAAACAAGCTACTTGTGGAGTGTAACTTTCCTTCCATATGCATTCATTCTGGGATGACACAGGAAGAAAGATTGACAAGATACAAAGGTCTTCAAGGAGGGTCATAAGAGGATATTAGTTGCAACTGATTTGGTTGGTAGAGGAATTGATATTGAGCGTGTAAATATTGTTGTTAACTATGACATGCCAGATTCTGCGGATACTTACTTGCACAGAGTTGGAAGGGCTGGCAGATTTGGTACGAAGGGGCCTTGGCAATCACGTTTGTTTCCTCTGCTTCTGACTCAGATGTGCTCAACCAGGTTCAAGAACGTTTTGAAGTTGATATAAAGGAGCTCCCAGCACAAATAGATACATCTACATATATGCCATCATAGATGATTTGGTATGATGCTACTTTCAAAGGCTTTTCAGTTCGAGCAATTTCAAGAAGGGGTTGATCTCGTTTCTGCCTCCCCTGGAAGGATGTCTGGAAAATTTTGAACACATCTGAGCTGGAGACAGCAGCGATTTTTGTTGAGCAGCATATATTTAGATTGATCAGTTAGTTTAACCTGACCTACTCTTATGATGGGATAATCACTCTGGAAATGCTGCTGAAGACTTGACTGAATTGATATATCCTATAAATGAACACATTGCTGTTGTATTAGCATTTGTTTATTAAGTACCTGGTCTTTCTTTTCACCCTGAAATGCTTTTGTAGGCTTATTTATTCAAATCTTTTACTTGTAACATATATATTGGTGCATTATTAATGCTCTCAGAAATGCCTAAAGGCTGAGATCCAAAATAGTATGAAGTGCCCTAATTTATGGCTATATCTTGAAAATATTGTGAATTAAAGATCATATGCAGGCATACGTATCTGTTTGATCTCCGTTAATGGTAGCATTTGTCTGCAGGCATATATCTTGATTATCGAAGTAGAATGATTGATATCGAAGTTAGATAGGATGATGT

Ace file of the UniGene uagpf_v2_unigene17656

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17375	13/118
SustainPine v2.0	sp_v2.0_unigene23409	5/118
SustainPine v2.0	sp_v2.0_unigene23580	28/118
SustainPine v2.0	sp_v2.0_unigene28307	53/118
SustainPine v2.0	sp_v2.0_unigene61174	14/118

Source	Descriptions	Term	Type	Identity
AutoFact	DEAD BOX RNA helicase RH15-like protein [Arabidopsis thaliana]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	82%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	82%
Blast2go	nucleolus	GO:0005730	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9C0

Fln msg: Overlapping hits, possible frame ERROR between 1171 and 1155,

Fln protein: MGELKESDTYQEELLDYEEEDVAQESVAARGAGETVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVLCHTRELAYQICHEFERFITYLTDLKVAVFYGGVNIKTHKSLLKNECPHIVVGTPGRILQLAKEKDLNLKNVRHFILDECDRMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVNRAAELNKLLVECNFPSICIHSGMTQEERLTRYxxxxxxxHKRILVATDLVGRGIDIERVNIVVNYDMPDSADTYLHRVGRAGRFGTKGPWQSRLFPLLLTQMCSTRFKNVLKLI*

Protein Length: 415

Fln nts: CGTCGTGACCTTGGCCGTCGTGACCTTGGCTGTCACTCAATCATTGTCCTTGCTCCACAACTGCGGCTGCGTCTTCAGATCTGTTCGTTACATCTCGGCGGTTGCGTGTTCGAGCCTCTACGCTCTCTGCGCGTCACATTTTCTCACGGTAGAAACCAAC_-_ATGGGAGAATTGAAGGAAAGCGACACTTACCAGGAAGAACTCCTTGACTATGAAGAAGAAGATGTTGCACAGGAATCAGTTGCAGCAAGGGGAGCTGGTGAAACTGTGAAAAAAGGTTATGTTGGCATTCATAGTTCAGGCTTCAGGGATTTTCTTCTGAAACCAGAGTTACTTCGTGCAATTGTAGACTCTGGATTTGAACATCCGTCAGAAGTACAACACGAGTGTATTCCCCAAGCAATCCTTGGGATGGATGTAATTTGCCAGGCAAAGTCTGGAATGGGGAAGACTGCTGTTTTTGTACTATCAACACTGCAGCAGATTGAACCTGTTGCAGGACAAGTTGCTGCTCTTGTCCTGTGTCATACTCGAGAATTGGCATATCAGATATGCCATGAATTCGAAAGGTTTATTACCTACTTGACAGACTTGAAAGTTGCTGTATTCTATGGGGGTGTAAATATCAAAACACATAAATCATTACTAAAAAATGAATGCCCCCATATAGTTGTTGGAACCCCTGGAAGGATACTGCAATTAGCAAAAGAGAAAGATCTGAATCTAAAAAATGTCCGGCATTTTATTCTGGATGAATGTGACAGGATGCTAGAATCTCTTGACATGCGGAAAGATGTCCAGGATATTTTCAAGATGACCCCTCATGACAAGCAAGTAATGATGTTCTCAGCCACACTGAGCAAGGAAATTCGGCCTGTCTGCAAAAGATTTATGCAAGATCCTATGGAGATATACGTTGATGATGAGGCAAAGTTGACACTTCATGGACTAGTTCAGCACTACATCAAGTTGAGTGAGCTGGAGAAGAACCGTAAATTGAATGATTTGCTCGATGCGCTGGACTTCAACCAAGTGGTGATATTTGTTAAGAGCGTGAACAGAGCTGCGGAGCTAAACAAGCTACTTGTGGAGTGTAACTTTCCTTCCATATGCATTCATTCTGGGATGACACAGGAAGAAAGATTGACAAGATACxxxxxxxxxxxxxxxxxxxxxCATAAGAGGATATTAGTTGCAACTGATTTGGTTGGTAGAGGAATTGATATTGAGCGTGTAAATATTGTTGTTAACTATGACATGCCAGATTCTGCGGATACTTACTTGCACAGAGTTGGAAGGGCTGGCAGATTTGGTACGAAGGGGCCTTGGCAATCACGTTTGTTTCCTCTGCTTCTGACTCAGATGTGCTCAACCAGGTTCAAGAACGTTTTGAAGTTGATATAA___AGGAGCTCCCAGCACAAATAGATACATCTACATATATGCCATCATAGATGATTTGGTATGATGCTACTTTCAAAGGCTTTTCAGTTCGAGCAATTTCAAGAAGGGGTTGATCTCGTTTCTGCCTCCCCTGGAAGGATGTCTGGAAAATTTTGAACACATCTGAGCTGGAGACAGCAGCGATTTTTGTTGAGCAGCATATATTTAGATTGATCAGTTAGTTTAACCTGACCTACTCTTATGATGGGATAATCACTCTGGAAATGCTGCTGAAGACTTGACTGAATTGATATATCCTATAAATGAACACATTGCTGTTGTATTAGCATTTGTTTATTAAGTACCTGGTCTTTCTTTTCACCCTGAAATGCTTTTGTAGGCTTATTTATTCAAATCTTTTACTTGTAACATATATATTGGTGCATTATTAATGCTCTCAGAAATGCCTAAAGGCTGAGATCCAAAATAGTATGAAGTGCCCTAATTTATGGCTATATCTTGAAAATATTGTGAATTAAAGATCATATGCAGGCATACGTATCTGTTTGATCTCCGTTAATGGTAGCATTTGTCTGCAGGCATATATCTTGATTATCGAAGTAGAATGATTGATATCGAAGTTAGATAGGATGATGT

Fln Alignment:

Contig17656___MGELKESDTXXXXXXXXXXXXVAQESVAARGAGETVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVLCHTRELAYQICHEFERFITYLTDLKVAVFYGGVNIKTHKSLLKNECPHIVVGTPGRILQLAKEKDLNLKNVRHFILDECDRMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVNRAAELNKLLVECNFPSICIHSGMTQEERLTRYxxxxxxHKRILVATDLVGRGIDIERVNIVVNYDMPDSADTYLHRVGRAGRFGTKG
D5A9C0________________MGELKESDTYQEELLDYEEEDVAQESVAARGAGETVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVLCHTRELAYQICHEFERFITYLTDLKVAVFYGGVNIKTHKSLLKNECPHIVVGTPGRILALAREKDLNLKNVRHFILDECDRMLESLDMRKDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVNRAAELNKLLVECNFPSICIHSGMTQEERLTRYxxxxxxHKRILVATDLVGRGIDIERVNIVVNYDMPDSADTYLHRVGRAGRFGTKG

SNPs (tot: 111)

Position	A %	C %	G %	T %	Probability
16		75		25	0.996473
21		25	75		0.996473
23		25	75		0.996473
26	25	75			0.996473
29		25	75		0.996473
30			75	25	0.996473
40		75		25	0.996473
41	50			25	0.995533
329			86	13	0.999973
399	90			10	0.999898
400	90		10		0.999898
683		90		10	0.90298
685			10	90	0.90298
686			90	10	0.90298
689	90	10			0.90298
690		10	90		0.90298
691			90	10	0.90298
692	90			10	0.90298
693			10	90	0.90298
694	90		10		0.90298
700	90	10			0.90298
702		10		90	0.90298
729	88			11	0.923564
730	88		11		0.923564
731	88		11		0.923564
732	88	11			0.923564
738			88	11	0.923564
739		11	88		0.923564
740	11	88			0.923564
781		36		63	1.0
783	63			36	1.0
785	63		36		1.0
788	36	63			1.0
789		36	63		1.0
790		36	63		1.0
791	63			36	1.0
792	63			36	1.0
793	63		36		1.0
795	63	36			1.0
800	36	63			1.0
801	63	36			1.0
802			63	36	1.0
803		36	63		1.0
877		10		90	0.90298
878			90	10	0.90298
942			11	88	0.923564
945	88		11		0.923564
948	11		88		0.923564
949	88	11			0.923564
952	88			11	0.923564
955			11	88	0.923564
957	88			11	0.923564
1033	83		16		0.994512
1034			83	16	0.994512
1036		16	83		0.994512
1038		16		83	0.994512
1069	40		60		1.0
1118		66		33	0.997452
1185			80	20	0.995493
1186		20	80		0.995493
1222		40		60	1.0
1237	83			16	0.994512
1238	83	16			0.994512
1239	83		16		0.994512
1240		16		83	0.994512
1243		14		85	0.993533
1246		14		85	0.993533
1249			14	85	0.993533
1251	85	14			0.993533
1257	85		14		0.993533
1264	85	14			0.993533
1265	14		85		0.993533
1270			12	87	0.992554
1271			87	12	0.992554
1277	87	12			0.992554
1281	85		14		0.993533
1285	14		85		0.993533
1287	85			14	0.993533
1305			86	13	0.999973
1310	13	6		80	0.999961
1322	6		56	6	1.0
1324	6		31	62	1.0
1325		68		31	1.0
1326		43		56	1.0
1460		9	90		0.999872
1462		9		90	0.999872
1463	85		14		1.0
1467		14		85	1.0
1468		9	85	4	0.999726
1469		90		9	0.999872
1471	90		9		0.999872
1474			10	90	0.999898
1479	85	14			1.0
1480			90	9	0.999872
1481		9	85	4	0.999726
1482	9	90			0.999872
1499		15		85	1.0
1500			10	90	0.999898
1503	89		10		0.999919
1504	89			10	0.999919
1507	88	11			0.999937
1508			88	11	0.999937
1509			88	11	0.999937
1512		11		88	0.999937
1515	87	12			0.999964
1516	12			87	0.999964
1582	5		78	5	0.999769
1584			89	10	0.999919
1585	5	5	5	10	0.999718
1593		5		72	1.0
1914		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain