SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17441

Length: 1074 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17441

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8971	19/30
SustainPine v2.0	sp_v2.0_unigene21534	4/30
SustainPine v2.0	sp_v2.0_unigene78612	5/30

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxidase n=3 Tax=Picea abies RepID=Q4W2V2_PICAB	-	-	86%
FL-Next	tr=Peroxidase; Picea abies (Norway spruce) (Picea excelsa).	-	-	84%
Blast2go	cationic peroxidase 1-like	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	0.0	82%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine metabolism	00360	82%
Blast2go	Methane metabolism	00680	82%
Blast2go	Phenylpropanoid biosynthesis	00940	82%
Blast2go	Biosynthesis of phenylpropanoids	01061	82%
Blast2go	Metabolic pathways	01100	82%
Blast2go	Biosynthesis of secondary metabolites	01110	82%

Source	GOs	Term	Type	Identity
Blast2go	hydrogen peroxide catabolic process	GO:0042744	Biological Process	82%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	82%
Blast2go	heme binding	GO:0020037	Molecular Function	82%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	82%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	82%
Blast2go	extracellular region	GO:0005576	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peroxidase, active site	IPR019794	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q4W2V4

Fln msg: Separated hits, possible frame ERROR between 282 and 299,

Fln protein: MMMRTLACIGLMAVFVAFIHINAVNGQLSSTFYAKSCPRLPSIVKSVVKQAVAKEKRMGASLVRLHFHDCVxxxxxxxGSILLDDNATFTGEKTAGPNANSARGFEVIDSIKTQVEAACSGVVSCADILTIAARDSIVELQGPTWTVMLGRRDSTTASLSAANNNIPSPASSLSTLISSFQGHGLSTKDLVALSGAHTIGQSRCAFFRTRIYNETNINAAFATSVKANCPSAGGDSNLSPLDAVTPITFDNKYYSNLKIQKGLLHSDQQLFNGGSTDSQVTAYSTNQNSFFIDFTAAMVKMGNISPLTGTNGQIRKNCRKSN*

Protein Length: 324

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTCGCTCTTATCTTCTGTGTTTCATCGTTTTCTTCCAAAT_-_ATGATGATGAGGACTCTAGCGTGCATTGGGTTAATGGCTGTGTTTGTAGCCTTCATACATATAAACGCTGTGAATGGGCAGCTGAGCTCAACGTTTTATGCCAAATCGTGTCCGAGGTTGCCATCGATAGTGAAATCAGTGGTGAAGCAAGCGGTCGCTAAGGAGAAAAGAATGGGAGCGTCCTTGGTCCGCCTTCACTTTCACGATTGCGTCGTxxxxxxxxxxxxxxxxxxCGGTTCAATCTTATTGGATGACAACGCGACATTTACCGGAGAAAAGACTGCAGGCCCAAACGCCAATTCTGCGAGAGGATTCGAAGTAATAGACAGCATCAAAACTCAAGTGGAGGCAGCCTGCAGTGGAGTCGTGTCGTGTGCAGACATTCTCACCATTGCTGCTCGTGATTCTATTGTTGAACTTCAAGGCCCAACATGGACGGTAATGCTTGGAAGGCGAGACTCCACGACTGCGAGTTTAAGCGCTGCAAACAACAACATTCCATCTCCCGCTTCCAGTCTGAGCACACTCATCTCATCTTTTCAAGGTCACGGTCTTTCTACCAAAGACCTTGTTGCACTCTCAGGTGCTCATACAATTGGTCAATCACGATGCGCCTTTTTCAGAACTCGGATCTACAACGAAACCAACATTAACGCTGCTTTCGCTACATCTGTAAAGGCAAACTGCCCCAGCGCTGGTGGCGACAGCAACCTCTCTCCCTTAGATGCGGTCACCCCAATCACATTTGACAACAAGTATTACTCTAATCTGAAAATACAGAAAGGACTTCTCCACTCCGACCAGCAGCTCTTTAATGGAGGTTCTACAGATTCTCAGGTTACTGCGTACAGCACCAATCAGAACAGCTTCTTTATAGACTTTACAGCTGCCATGGTGAAGATGGGAAATATTAGCCCTCTCACTGGCACTAACGGACAAATCCGCAAAAACTGCAGGAAGTCCAATTAG___TCTCTCTGAAGATTGTATTCTCCGTACTCTTTCAGTCTTTA

Fln Alignment:

Contig17441___MMMRTLACIGLMAVFVAFIHINAVNGQLSSTFYAKSCPRLPSIVKSVVKQAVAKEKRMGASLVRLHFHDCVVxxxxxxGSILLDDNATFTGEKTAGPNANSARGFEVIDSIKTQVEAACSGVVSCADILTIAARDSIVELQGPTWTVMLGRRDSTTASLSAANNNXXXXXXXXXXXXXXFQGHGLSTKDLVALSGAHTIGQSRCAFFRTRIYNETNINAAFATSVKANCPSAGGDSNLSPLDAVTPITFDNKYYSNLKIQKGLLHSDQQLFNGGSTDSQVTAYSTNQNSFFIDFTAAMVKMGNISPLTGTNGQIRKNCRKSN
Q4W2V4________________MMMRTLVCIGVMAVLLCSININAVNGQLSSTFYAKSCPRVQSIVKTVVKQAVAKEKRMGASLVRLHFHDCFVxxxxxxGSILLDDNATFTGEKTAGPNANSARGFDVIDTIKTQVEAACSGVVSCADILTIAARDSIVELQGPTWTVMLGRRDSPTASLSAANNNIPSPASSLSTLITSFQNHGLSTKDLVALSGAHTIGQSRCAFFRTRIYNESNINAAFATSVKPNCPSAGGDNTLSPLDVVTPTTFDNKYYSNLKVQKGLLHSDQQLFNGGSTDSQVTTYSTNQNSFFTDFAAAMVKMGNISPLTGTSGQIRKNCRKAN

SNPs (tot: 85)

Position	A %	C %	G %	T %	Probability
277			55	44	1.0
284		88	11		0.923564
285	55	44			1.0
286	44	11		44	1.0
287		11		88	0.923564
288			88	11	0.923564
289			88	11	0.923564
290		44	55		1.0
295	44		44	11	1.0
296	44	44	11		1.0
299	44	11	44		1.0
300	11		88		0.923564
301		11		88	0.923564
310	62		37		1.0
334		85		14	0.993533
349	85		14		0.993533
409		28	71		1.0
410		28	71		1.0
445		85		14	0.993533
469		28		71	1.0
479	25		75		0.996473
544		75		25	0.996473
609		40	60		1.0
626	25	75			0.996473
635		50		50	1.0
644		50		50	1.0
674	42		42	14	1.0
675		14		85	0.993533
677		85		14	0.993533
679	16	83			0.994512
681		16		83	0.994512
684			16	83	0.994512
685			16	83	0.994512
687	83			16	0.994512
690	83			16	0.994512
692	20			80	0.995493
694			80	20	0.995493
695		80	20		0.995493
702	85		14		0.993533
703	85			14	0.993533
706	85			14	0.993533
707	85		14		0.993533
711	85			14	0.993533
712	85			14	0.993533
713		71	14	14	0.984337
714	14		85		0.993533
715		14		85	0.993533
717	85		14		0.993533
718	85			14	0.993533
720	14		85		0.993533
723	14		85		0.993533
745		14	85		0.993533
762		12	87		0.992554
765		12	87		0.992554
767	37	25	25	12	1.0
770		25		75	1.0
771	87	12			0.992554
772	75		12	12	0.975346
773		87		12	0.992554
774	87		12		0.992554
775	87		12		0.992554
777		87	12		0.992554
780	12			87	0.992554
782		77		22	0.999999
783		88	11		0.923564
784		88		11	0.923564
786			11	88	0.923564
791		11		88	0.923564
792		11	88		0.923564
793		22		77	0.999999
794			88	11	0.923564
796			11	88	0.923564
799		88		11	0.923564
800	20	73	6		1.0
804	80	13			0.999961
820	53	46			1.0
829			40	60	1.0
837			46	53	1.0
932	15		84		0.999986
933	23	69		7	1.0
949	69		30		1.0
966	22		77		0.999999
998	66		33		1.0
1002	33			66	1.0
1035	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain