SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17212

Length: 1252 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17212

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22044	66/67

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MazG domain containing protein	-	-	2.0e-07	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	dctp pyrophosphatase 1-like	-	-	0.0	84%

Source	InterPros	Term	Type	Identity
Sma3	NTP pyrophosphohydrolase MazG, putative catalytic core	IPR004518	-	-
Sma3	EAR	IPR009039	-	-
Sma3	NTP Pyrophosphohydrolase MazG-related, RS21-C6	IPR011394	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADR7

Fln msg:

Fln protein: MNGKGEISDGDSMKGTDSGVTIEELQRKMADFTRERDWDRFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWNAAEKEHLGEELSDVLLYLVRLADICGVDLGEAALRKVKKNCLKYPVETCKGSSKKYTHYANGVNEEELRVDNL*

Protein Length: 151

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGAGTGACAGAGTTCCCGCCGCTGGGAATCCGTGTGTCCTTTGTGTCTTTCATTGTCTGGACAGAGTGATTTGATTTAGATAAAGGCGTTCTCTCGTGTTGAATTTTTTCGTCTCCTTGATTTGTGCTGGTGCAGATCTGTTTCAATTCTGGTCTGTGTTGGGTGTTTGGTTACGGGCCAGCAAA_-_ATGAATGGGAAGGGGGAAATTTCAGATGGGGATTCTATGAAGGGGACAGACAGCGGCGTTACGATTGAAGAGTTGCAGAGGAAAATGGCGGACTTCACCAGGGAGAGAGATTGGGATCGATTCCATAGTCCTCGGAACCTTCTCCTGGCTCTCGTGGGAGAAGTGGGTGAACTGTCTGAGATATTTCAGTGGAAGGGTGAAGTTCCGAAAGGTCTTCCAGATTGGAATGCTGCAGAGAAGGAGCATCTTGGTGAAGAGTTGTCAGACGTTCTACTCTATTTGGTAAGACTTGCAGACATCTGTGGGGTGGACCTTGGTGAAGCAGCGCTAAGAAAAGTTAAGAAAAATTGTCTCAAATATCCTGTTGAAACATGCAAGGGTTCCTCGAAGAAGTACACGCATTATGCCAATGGTGTGAATGAAGAGGAGTTAAGAGTTGATAATCTGTGA___GTTATACACCAAAATTTGTGATGCTGCTTCAAAACGTGCTTTTGGTTATACAGTTGAAATGCTACAGTGTACAGTTCAGATATTGTGCTGAAGAATTTTGTGAATTGCTTTTACTTCAGGAGTCTCTCGCTCAGGTTTTAACAAGAGGGGTGAGAATGAAACATGGATTCATGAATATCAAAGGAAATCATACAGTTGTCTTTATGATATGATGTTGTTGAAGTTTTCAATAGTTGCCAAATGGAACCTTAATAATTTGATGAAAATATTCATTGTGCAGAAAGCTATCTTATATGATAATGTTCAGTACCAGTTTTTGAGAGTGAACTTAGAAATGGGCTGTGTTGGAGATACAAAATTGGTTGTGTGACTGAAACTGGCAGGGTTGACATCCAGCAGGCATCTAGCCTATGGATTTAAATCATTCACTAGTGATCCAAGATATAGCACTACCTCTGTGCAGGCGCTAATTTCAAGGTTACGCAGACTTTTTGGGCAATGTTTTCTTCCCATATGCTCTATCTCTGCATACAAACAAAGCAATGTTAGTCTTTGATATGCATCTGAACTTTAGAGTAACGTCTTAAATAACC

Fln Alignment:

Contig17212___MNGKGEISDGDSMK--GTDSGVTIEELQRKMADFTRERDWDRFHSPRNXXXXXXXXXXXXSEIFQWKGEVPKGLPDWNAAEKEHLGEELSDVLLYLVRLADICGVDLGEAALRKVKKNCLKYPVETCKGSSKKYTHYANGVNEEELRVDNL
D5ADR7________________MKGEGAISDEDSAKEPSAGGGVTIEELQGKMAEFTRERNWDQFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWNAAEKEHLGEELSDVLLYLVRLADICEVDLGEAALRKVKKNGLKYPVERCKGSSKKYTHLTNVVNEEEFRVDHI

SNPs (tot: 65)

Position	A %	C %	G %	T %	Probability
235		20		80	0.995493
270			85	14	0.993533
274			14	85	0.993533
278	85	14			0.993533
283	85		14		0.993533
284		14	85		0.993533
285	85			14	0.993533
288		14		85	0.993533
289	14		85		0.993533
291	85			14	0.993533
292		14	85		0.993533
304		22	77		0.999999
306	77			22	0.999999
308			22	77	0.999999
310		77	22		0.999999
314	77			22	0.999999
317		22	77		0.999999
318	77			22	0.999999
320	77			22	0.999999
321		22	77		0.999999
323		22	77		0.999999
324	77			22	0.999999
325		22		77	0.999999
326	22			77	0.999999
327			22	22	0.999999
346		81	18		0.999994
350			81	18	0.999994
351	81		18		0.999994
357		81	18		0.999994
358			18	81	0.999994
360		36		45	1.0
363			81	18	0.999994
365	18			81	0.999994
388		40		59	1.0
396		45	54		1.0
397	59	40			1.0
398		4		50	1.0
401		4	38		1.0
402	59	36			1.0
404			42	57	1.0
405			4	85	0.999726
408		38	61		1.0
410		23	57		1.0
411	23	19	57		1.0
540	90	10			0.999898
661	90	10			0.999898
686		11		88	0.999952
701	88			11	0.923564
702	88	11			0.923564
707		11	88		0.923564
708	11	77			0.968132
722			77	22	0.999999
813	90			10	0.90298
814		10	90		0.90298
837	10			90	0.90298
870		10		90	0.90298
874			10	90	0.90298
876	90	10			0.90298
878	90		10		0.90298
880		10	90		0.90298
883	10		90		0.90298
988	20		80		0.999996
1021	11			88	0.923564
1083	14		85		0.993533
1235	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain