SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17037

Length: 1745 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17037

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22527	68/68

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MAD domain containing protein	-	-	8.0e-05	20%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	43%
Blast2go	protein	-	-	4.19549e-42	58%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D8RWS2

Fln msg: your sequence is longer than subject: 362 - 246

Fln protein: MALQAEYPCNVMLPESSWTRMRNLLPGDDKCLISPALANNTTQDFKMQAVTTNGAGNQQLPSVPFPGLIPGMTSCGTFHAAEAELNANMWIGNNNSNHTPRKRLRESVPDQLGNFVPFEGANANTLLNMPQSNGEAVSTGLRLCLEGNNTLNSTNGREFTACSGNAYSLNHKLLAEMQRQKNDIDEYMKSQGERLRQILTEKTQKHSRALLCAVAQGMSSKLREKEAQVMTMKRRNIELEDQIRGLMVETRSWQNRAKCSEALARSLRVQIDEISKEGSGDSQDEAAASSHFVTGNSMNAVYKENRDLETQKTCRLCRSNDVSILLLPCRHLCLCRDCENKVDVCPVCHHSKTASVQVYLS*

Protein Length: 363

Fln nts: CCGAGAATCTTGACTGGCCTTTGAAGTTTCAGTTATCGGGGATCGAACTCGTGACGTTTAATTGCTCGTGACCTTGGCTGTCACTCAATCTACGGG_-_ATGGCTTTGCAGGCGGAGTATCCGTGTAATGTGATGTTGCCGGAATCGTCGTGGACCAGAATGAGGAATTTGCTTCCGGGAGACGATAAGTGTCTGATTTCACCTGCTCTGGCTAATAATACGACACAGGATTTCAAAATGCAGGCTGTTACCACGAACGGGGCTGGCAATCAGCAATTGCCATCAGTTCCATTTCCCGGTTTAATCCCCGGGATGACATCGTGCGGGACGTTTCATGCAGCGGAGGCGGAGCTGAATGCGAACATGTGGATTGGCAATAATAACAGCAATCACACTCCGAGAAAAAGGCTCAGAGAATCGGTTCCTGATCAGCTCGGGAATTTTGTTCCTTTCGAAGGCGCCAATGCGAACACCTTGCTGAACATGCCACAGTCCAACGGCGAAGCGGTCTCCACCGGCCTACGCCTCTGCTTGGAAGGCAATAATACGTTAAATTCCACCAACGGCAGAGAATTTACCGCCTGCAGCGGCAATGCATACTCTTTAAACCACAAACTTCTCGCGGAAATGCAGCGCCAGAAGAACGATATAGACGAGTACATGAAATCGCAGGGTGAGCGTCTGAGGCAAATCCTGACAGAGAAGACACAGAAGCATTCGAGGGCGTTGCTGTGTGCCGTGGCGCAGGGCATGTCCTCCAAGCTGCGCGAGAAGGAGGCCCAGGTGATGACCATGAAACGAAGGAACATCGAACTAGAAGACCAGATAAGAGGTCTCATGGTCGAAACACGTTCGTGGCAGAACCGCGCCAAGTGCAGCGAAGCGCTGGCCAGGTCCCTGCGGGTGCAGATAGACGAAATAAGCAAAGAAGGGAGCGGAGATAGCCAAGACGAGGCCGCAGCGTCGTCTCATTTCGTGACCGGAAACTCCATGAACGCCGTCTACAAGGAGAACAGGGACCTTGAAACACAGAAAACATGCAGGCTGTGCAGGAGTAATGATGTGTCCATATTGTTGTTGCCCTGCCGCCATCTTTGCCTGTGCAGGGACTGCGAAAACAAAGTAGACGTGTGCCCGGTTTGCCACCATTCGAAAACCGCGAGCGTGCAGGTCTACTTGTCATGA___ATCGCTTTGTTCTAAATTGTTTCAACCATCTCAAAACATTAAACGGTTTTGTTGCATTTTTGTCATGATGGGTCGTGCGTTGCAGATTCGTTGCCTTTTCAGTTTGTAAATTGCGAGAGGAATAGGAAGAGTTTGTTTAATAGGGGATTTGATAACAGTTAAGTAATTAATAGAGAGGGAGCCGTTTGCGATGGCTGTCATTAACGTTTTAAGACCAATAAAGAAATTGGAAGTTTCTTCATAATTTGTGAGTGGAAGTTTCTTCATAATTTGTGACTGCAGTGGAACCAGCGTTTGAGCTTTTTGTAAATGGAGTTAATCTTGATTTGGACTTATTTGCCAAAATGAATTCATTCCTAGATTCCTTACATCAATGTGATGATTAAATTGGCTTCATCCTTAGATTCCTTCGCCGAAATGATCTATCGGTATTTTTATCATTTGGAAATTCCATAATTTTTACAAGTATTATGAATTGTAATGTAATCTCAAAATCTGAGTGAAATAGTATTTTATCATTTGGAAGTCCGATAAAAATCTGAGTGAAATAATGAATTTTTACG

Fln Alignment:

Contig17037___VSTGLRLCLE------------GNNTLNSTNGREFTACSGNAYSLNHKLLAEMQRQKNDIDEYMKSQGERLRQILTEKTQKHSRALLCAVAQGMSSKLREKEAQVMTMKRRNIELEDQIRGLMVETRSWQNRAKCSEALARSLRVQID-------EISKEGSGDSQDEAAASSHFVTGNSMNA-VYKENRDLETQKTCRLCRSNDVSIXXXXXXXXXXXXXXENKVDVCPVCHHSKTASVQVYLS
D8RWS2________________VSTGLRLAFPDDRLSSTAPSGCGKLELNSTTGLSM---------LVEEIAIELQRQRDEIEQLMRAQVKQMRRAIEEKQQQQSRALLNSVERFVARRLREKDIEMEKINRRNMELEERVKQLTVEARLWQNKAKNGEMMVASLRSNLQQAVALSREQSREGVGDTDADDAESSHPDDAADDHARTYKENKELREKRTCRVCRSNDVCILLLPCRHLCLCKECEARLDTCPLCRHSKNASVQVYMS

SNPs (tot: 63)

Position	A %	C %	G %	T %	Probability
71		75	25		0.996473
72	50		25	25	0.995533
73			75	25	0.996473
74	25	25	50		0.995533
75		25	75		0.996473
76		25	50	25	0.995533
77			75	25	0.996473
78	75			25	0.996473
79		25	75		0.996473
80		75	25		0.996473
81		25	50	25	0.995533
82			50	50	1.0
84			75	25	0.996473
86	25			75	0.996473
87		25	25	50	0.995533
89		25	50		0.995533
90	25	75			0.996473
95	75	25			0.996473
96	25	75			0.996473
880	83		16		0.994512
881			83	16	0.994512
884	83			16	0.994512
885	83		16		0.994512
886	16		83		0.994512
888		16	83		0.994512
889		83		16	0.994512
896			83	16	0.994512
900	16	83			0.994512
905	16		83		0.994512
970	12			87	0.992554
1032	85		14		0.993533
1033		85		14	0.993533
1034	85	14			0.993533
1036	85			14	0.993533
1037	85		14		0.993533
1039	85	14			0.993533
1041	85			14	0.993533
1045	85			14	0.993533
1046		12	87		0.992554
1047			87	12	0.992554
1048		87		12	0.992554
1049	12	12		75	0.975346
1050		12	87		0.992554
1054	87	12			0.992554
1055			75	12	0.975346
1056			87	12	0.992554
1057	87		12		0.992554
1059		12		87	0.992554
1060	87			12	0.992554
1061	87		12		0.992554
1063		12	87		0.992554
1065		12		87	0.992554
1066			87	12	0.992554
1067		12		87	0.992554
1068	12		87		0.992554
1174		14	85		0.999981
1178	78	14	7		0.999974
1222	85			14	0.999981
1223	85		14		0.999981
1374			10	90	0.999898
1378		10	90		0.999898
1379	90			10	0.999898
1403		52		47	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain