SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16679

Length: 2564 nt

UniGene Fasta

>uagpf_v2_unigene16679
CGTCGTGACCTTGGCTGTCACTCAGGAACATGGTTGAATATAAACACGGTTGGGAGCATTGGGCACATCGAAATTTTCTCAATTCATTATTATACTAGTCCTAAAAAGGTAGGAGGGGGTGGCTCAACTTCCTTCTTAAACAAAAATTGAAAGGGATTCTAAATTCTAACCTACCATAACCTCCCTAAATCACAATAATAATGAACTTGTAGAAGAGAGTAATCACAACAACAGCTACTCAGCATCTGCAACAGGATTCCTTGCAACACTTGTCTTGTGATGCCCAAATACTAAATTCATCTACTCCATCCACCTTTGCATGACACAATCTTCGCAGAAACTGTTGGATTTGCAATTGCATTCAGGGGAGTTGTGGTTCTCGTGTCTGAATATATACCTGCTTTGGTGTATGGAACGCATCACCCTGAAGTAAATCAAATAATTCCCAGGCTTCTCAGGACAGGGCAATGGCGGGCTCCGCACTTGCAGGCATGACTGCTTCTTTATCCATGGCTGGATTCGAACCCAGTCGAAGAACTTGCAGTCGTTCGATTTCTAGATTTGATGGTCTCAGAGCTGCTGAAGCTGAGCTCTCTGATGTTTCTGTGCTCTTGGGCGTTCGGCCTAACAGGCTATCTCGTGCTGGTCCCAAGACCGGCGTCCGAGCCATGTTACTTCCTTCAGTCAATGCCCTTAACAGAGAAAAAGATCCTAAAAAGAGAGTGGTTATTACAGGCATGGGGCTAGTTTCTGTTTTCGGAAATAATGTTGACACATATTACGAAAGACTCCTGGAAGGTCAGAGTGGGATTACCCCTATAGACCGCTTTGATGCTTCAAAGTTTCCCACAAGATTTGGAGGACAGATTCGGGGATTCTCATCTGAGGGTTATATTGATCCAAAGAATGACCGTCGTCTGGATGATTGTATTAGATATTGCCTGGTTAGTGCGCAAAAGGCACTTGAAGATGCAGATCTGGGAAAGGATAAAATAAATAAGATTGATAAGGAGCGAGCTGGTGTACTAGTAGGCAGTGGAATGGGTTGGCTATCAGTTTTTTCTGATGGAGTACAGGCTCTTCTAGACAAAGGAAACAGGAAAATAACACCCTTTTTTATACCATATGCAATTACCAACATGGGCTCTGCATTGCTTGGCATTGAAGTAGGATTCATGGGTCCAAATTATTCTATATCAACAGCATGTGCTACATCCAACTATTGCTTCTATGCAGCTGCAAATCATATTCGCAGAGGTGAGGCAGATATCATGCTAGCTGGTGGTACTGAAGCAGCAATTATTCCCATTGGTTTGGGTGGGTTTGTTGCATGCCGAGCCTTATCTCAGAGAAATGATGATCCTCAGTCTGCCTCAAGGCCCTGGGACAAAGACCGAGATGGCTTTGTCATGGGTGAAGGTGCAGGCGTGTTGGTTATGGAGAGCTTGGAACATGCAAAGAAGAGAGGTGCTCCAATTCTTGCTGAATATCTTGGTGGAGCTATTAACTGTGATGCTTATCACATGACAGACCCAAGGGCTGATGGCCTTGGTGTCTCATCATGTATTGAGAGGAGTCTTATTGATGCAGGGGTGTCACCAGAAGAGGTGAATTATATAAATGCGCATGCCACATCAACTCTTGCAGGTGACTTGGCTGAGGTTAATGCCATCAAGAGTGTGTTCAAAAACACATCTGAAATAAAAATAAATGCAACTAAGTCTATGATAGGGCACTGTCTAGGTGCAGCTGGTGGGCTAGAAGCCATTGCCACTGTCAAAGCCATCAATACTGGTTGGCTGCATCCATCGATAAATCAATTTAACCCAGAACCCGCGGTGGAATTTGATACTGTTCCTAACGTAAAGAAGCAGCACGAAGTAAATGTTGCTATTTCAAACTCGTTTGGTTTTGGGGGCCATAATTCAGTTGTAGTGTTCGCACCCTATCGAGAGTGAGAACACATAGCTTTGTTTATTGTTTGAAAATAGTCCATGTAGCAGATGCAATCTTTAAAAAATGAGAGAGCATTTCATTTGATTCTTTTATGCTACTGAAACTGCAAGAGGTTTCCCATTATTAATTGGAAACCTCTGTTGTGAAATAAATTTTAATTGACATAAAAAGTTCAGATTGGGAGCAGAAATATTGGTGTCAGAGTAGCAGTTGGATTCATTCTTCAATCAAGAGAGAATATGTTATTCTCTTCATTTTATCTTTAGTATAACGTCTTCATCCTATCATTATGACATTTAGGATCAGCAGGGGTTCAAATCTTCCTCAAATTTTGGCCATCATATTTTTCATATTTCACATGCAAGAAAAGGGTTTCCTAGTAACCTTCTTTCACCTGCAAGAAGATGGTTTACTAGTAAGAATATTTCAAATGATGTGTATGCTTTACTAGTAAGAGTGATCGAATAGAGAATCCAATGTGTGACTTTTTATTGTCGTGATGTTTCTCATATGACTGAGCTGTTAAAATTTGTCAGGTGCAGAGCTAGAGTATTCAGTGGTAATGTTTTCCTGTTTCTTGGGGGCTCGTGACTCTTGTATCAGAATTA

Ace file of the UniGene uagpf_v2_unigene16679

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9900	77/95
SustainPine v2.0	sp_v2.0_unigene64153	8/95

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-ketoacyl-ACP synthase I-1 n=5 Tax=Papilionoideae RepID=D8KXY8_ARAHY	-	-	82%
FL-Next	sp=3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	84%
Blast2go	at5g46290 mpl12_7	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-ketoacyl-acyl-carrier-protein synthase I.	EC:2.3.1.41	-	0.0	92%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fatty acid biosynthesis	00061		0.0	92%
Blast2go	Metabolic pathways	01100		0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	fatty acid biosynthetic process	GO:0006633	Biological Process	92%
Blast2go	3-oxoacyl-[acyl-carrier-protein] synthase activity	GO:0004315	Molecular Function	92%
Blast2go	plastid	GO:0009536	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	3-oxoacyl-[acyl-carrier-protein] synthase 2	IPR017568	-	-
Sma3	Beta-ketoacyl synthase	IPR000794	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-
Sma3	Beta-ketoacyl synthase, C-terminal	IPR014031	-	-
Sma3	Beta-ketoacyl synthase, N-terminal	IPR014030	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P52410

Fln msg:

Fln protein: MAGSALAGMTASLSMAGFEPSRRTCSRSISRFDGLRAAEAELSDVSVLLGVRPNRLSRAGPKTGVRAMLLPSVNALNREKDPKKRVVITGMGLVSVFGNNVDTYYERLLEGQSGITPIDRFDASKFPTRFGGQIRGFSSEGYIDPKNDRRLDDCIRYCLVSAQKALEDADLGKDKINKIDKERAGVLVGSGMGWLSVFSDGVQALLDKGNRKITPFFIPYAITNMGSALLGIEVGFMGPNYSISTACATSNYCFYAAANHIRRGEADIMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQSASRPWDKDRDGFVMGEGAGVLVMESLEHAKKRGAPILAEYLGGAINCDAYHMTDPRADGLGVSSCIERSLIDAGVSPEEVNYINAHATSTLAGDLAEVNAIKSVFKNTSEIKINATKSMIGHCLGAAGGLEAIATVKAINTGWLHPSINQFNPEPAVEFDTVPNVKKQHEVNVAISNSFGFGGHNSVVVFAPYRE*

Protein Length: 498

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGAACATGGTTGAATATAAACACGGTTGGGAGCATTGGGCACATCGAAATTTTCTCAATTCATTATTATACTAGTCCTAAAAAGGTAGGAGGGGGTGGCTCAACTTCCTTCTTAAACAAAAATTGAAAGGGATTCTAAATTCTAACCTACCATAACCTCCCTAAATCACAATAATAATGAACTTGTAGAAGAGAGTAATCACAACAACAGCTACTCAGCATCTGCAACAGGATTCCTTGCAACACTTGTCTTGTGATGCCCAAATACTAAATTCATCTACTCCATCCACCTTTGCATGACACAATCTTCGCAGAAACTGTTGGATTTGCAATTGCATTCAGGGGAGTTGTGGTTCTCGTGTCTGAATATATACCTGCTTTGGTGTATGGAACGCATCACCCTGAAGTAAATCAAATAATTCCCAGGCTTCTCAGGACAGGGCA_-_ATGGCGGGCTCCGCACTTGCAGGCATGACTGCTTCTTTATCCATGGCTGGATTCGAACCCAGTCGAAGAACTTGCAGTCGTTCGATTTCTAGATTTGATGGTCTCAGAGCTGCTGAAGCTGAGCTCTCTGATGTTTCTGTGCTCTTGGGCGTTCGGCCTAACAGGCTATCTCGTGCTGGTCCCAAGACCGGCGTCCGAGCCATGTTACTTCCTTCAGTCAATGCCCTTAACAGAGAAAAAGATCCTAAAAAGAGAGTGGTTATTACAGGCATGGGGCTAGTTTCTGTTTTCGGAAATAATGTTGACACATATTACGAAAGACTCCTGGAAGGTCAGAGTGGGATTACCCCTATAGACCGCTTTGATGCTTCAAAGTTTCCCACAAGATTTGGAGGACAGATTCGGGGATTCTCATCTGAGGGTTATATTGATCCAAAGAATGACCGTCGTCTGGATGATTGTATTAGATATTGCCTGGTTAGTGCGCAAAAGGCACTTGAAGATGCAGATCTGGGAAAGGATAAAATAAATAAGATTGATAAGGAGCGAGCTGGTGTACTAGTAGGCAGTGGAATGGGTTGGCTATCAGTTTTTTCTGATGGAGTACAGGCTCTTCTAGACAAAGGAAACAGGAAAATAACACCCTTTTTTATACCATATGCAATTACCAACATGGGCTCTGCATTGCTTGGCATTGAAGTAGGATTCATGGGTCCAAATTATTCTATATCAACAGCATGTGCTACATCCAACTATTGCTTCTATGCAGCTGCAAATCATATTCGCAGAGGTGAGGCAGATATCATGCTAGCTGGTGGTACTGAAGCAGCAATTATTCCCATTGGTTTGGGTGGGTTTGTTGCATGCCGAGCCTTATCTCAGAGAAATGATGATCCTCAGTCTGCCTCAAGGCCCTGGGACAAAGACCGAGATGGCTTTGTCATGGGTGAAGGTGCAGGCGTGTTGGTTATGGAGAGCTTGGAACATGCAAAGAAGAGAGGTGCTCCAATTCTTGCTGAATATCTTGGTGGAGCTATTAACTGTGATGCTTATCACATGACAGACCCAAGGGCTGATGGCCTTGGTGTCTCATCATGTATTGAGAGGAGTCTTATTGATGCAGGGGTGTCACCAGAAGAGGTGAATTATATAAATGCGCATGCCACATCAACTCTTGCAGGTGACTTGGCTGAGGTTAATGCCATCAAGAGTGTGTTCAAAAACACATCTGAAATAAAAATAAATGCAACTAAGTCTATGATAGGGCACTGTCTAGGTGCAGCTGGTGGGCTAGAAGCCATTGCCACTGTCAAAGCCATCAATACTGGTTGGCTGCATCCATCGATAAATCAATTTAACCCAGAACCCGCGGTGGAATTTGATACTGTTCCTAACGTAAAGAAGCAGCACGAAGTAAATGTTGCTATTTCAAACTCGTTTGGTTTTGGGGGCCATAATTCAGTTGTAGTGTTCGCACCCTATCGAGAGTGA___GAACACATAGCTTTGTTTATTGTTTGAAAATAGTCCATGTAGCAGATGCAATCTTTAAAAAATGAGAGAGCATTTCATTTGATTCTTTTATGCTACTGAAACTGCAAGAGGTTTCCCATTATTAATTGGAAACCTCTGTTGTGAAATAAATTTTAATTGACATAAAAAGTTCAGATTGGGAGCAGAAATATTGGTGTCAGAGTAGCAGTTGGATTCATTCTTCAATCAAGAGAGAATATGTTATTCTCTTCATTTTATCTTTAGTATAACGTCTTCATCCTATCATTATGACATTTAGGATCAGCAGGGGTTCAAATCTTCCTCAAATTTTGGCCATCATATTTTTCATATTTCACATGCAAGAAAAGGGTTTCCTAGTAACCTTCTTTCACCTGCAAGAAGATGGTTTACTAGTAAGAATATTTCAAATGATGTGTATGCTTTACTAGTAAGAGTGATCGAATAGAGAATCCAATGTGTGACTTTTTATTGTCGTGATGTTTCTCATATGACTGAGCTGTTAAAATTTGTCAGGTGCAGAGCTAGAGTATTCAGTGGTAATGTTTTCCTGTTTCTTGGGGGCTCGTGACTCTTGTATCAGAATTA

Fln Alignment:

Contig16679___SVNALNREKDPKKRVVITGMGLVSVFGNNVDTYYERLLEGQSGITPIDRFDASKFPTRFGGQIRGFSSEGYIDPKNDRRLDDCIRYCLVSAQKALEDADLGKDKINKIDKERAGVLVGSGMGWLSVFSDGVQALLDKGNRKITPFFIPYAITNMGSALLGIEVGFMGPNYSISTACATSNYCFYAAANHIRRGEADIMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQSASRPWDKDRDGFVMGEGAGVLVMESLEHAKKRGAPILAEYLGGAINCDAYHMTDPRADGLGVSSCIERSLIDAGVSPEEVNYINAHATSTLAGDLAEVNAIKSVFKNTSEIKINATKSMIGHCLGAAGGLEAIATVKAINTGWLHPSINQFNPEPAVEFDTVPNVKKQHEVNVAISNSFGFGGHNSVVVFAPYR
P52410________________TVSAPKRETDPKKRVVITGMGLVSVFGNDVDAYYEKLLSGESGISLIDRFDASKFPTRFGGQIRGFSSEGYIDGKNERRLDDCLKYCIVAGKKALESANLGGDKLNTIDKRKAGVLVGTGMGGLTVFSEGVQNLIEKGHRRISPFFIPYAITNMGSALLAIDLGLMGPNYSISTACATSNYCFYAAANHIRRGEADMMIAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKARDGFVMGEGAGVLVMESLEHAMKRGAPIVAEYLGGAVNCDAHHMTDPRADGLGVSSCIERCLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKSTSGIKINATKSMIGHCLGAAGGLEAIATVKAINTGWLHPSINQFNPEQAVDFDTVPNEKKQHEVDVAISNSFGFGGHNSVVAFSAFK

SNPs (tot: 112)

Position	A %	C %	G %	T %	Probability
306			27	72	1.0
307		72		27	1.0
309	72		27		1.0
312		72	27		1.0
318			27	72	1.0
322	72		27		1.0
324		27	72		1.0
327	72			27	1.0
608		30	70		1.0
631		66	33		1.0
648	11		88		0.923564
726		33		66	0.997452
730		33		66	0.997452
731	66		33		0.997452
733			33	66	0.997452
738	66			33	0.997452
745			66	33	0.997452
746		33	66		0.997452
767	80			20	0.995493
770	80		20		0.995493
771	80	20			0.995493
776		20	80		0.995493
779	80			20	0.995493
832		83		16	0.994512
833		16		83	0.994512
834			16	83	0.994512
839		16	83		0.994512
845	83		16		0.994512
846	83		16		0.994512
847		16	83		0.994512
849			16	83	0.994512
852	16	83			0.994512
854	83			16	0.994512
923		85	14		0.993533
924	14			85	0.993533
925		14	85		0.993533
926		14	85		0.993533
927	85			14	0.993533
930	85		14		0.993533
931		14		85	0.993533
936		14		85	0.993533
939		14	85		0.993533
1037		37	62		1.0
1039		62		37	1.0
1040	62	37			1.0
1044	37		62		1.0
1045	62	37			1.0
1046	62	37			1.0
1048			62	37	1.0
1051		37		62	1.0
1052			40	60	1.0
1054			40	60	1.0
1056	40			60	1.0
1057	40	60			1.0
1058	40			60	1.0
1059	40	60			1.0
1061			83	16	0.994512
1094	80		20		0.995493
1095	80			20	0.995493
1096	80	20			0.995493
1102	80	20			0.995493
1104	80			20	0.995493
1105			80	20	0.995493
1107	80		20		0.995493
1108	80	20			0.995493
1109	80			20	0.995493
1110	80		20		0.995493
1549		33	66		0.997452
1550	66		33		0.997452
1553	33		66		0.997452
1900		12		87	0.992554
1903		12		87	0.992554
1905		87		12	0.992554
1906			12	87	0.992554
1908		12		87	0.992554
1909		12		87	0.992554
1912	87			12	0.992554
1913	87		12		0.992554
1914	87		12		0.992554
1920		14		85	0.993533
1921	14			85	0.993533
1922		14	85		0.993533
1923			85	14	0.993533
1924		14		85	0.993533
1925	14			85	0.993533
2004	87	12			0.992554
2009	87		12		0.992554
2014		12	87		0.992554
2016	87		12		0.992554
2018	87	12			0.992554
2021		85		14	0.993533
2022	85	14			0.993533
2027		14		85	0.993533
2028	14			85	0.993533
2038		18	81		1.0
2039	81	18			1.0
2040			81	18	1.0
2041	81			18	1.0
2043		81	18		1.0
2044	81	18			1.0
2046			18	81	1.0
2050		18		81	1.0
2052		18		81	1.0
2053	18		81		1.0
2210	91		8		0.999807
2213	9			90	0.999842
2214		9		90	0.999842
2215	90	9			0.999842
2218		90	9		0.999872
2219			9	90	0.999872
2278	91	2		5	0.995912
2286	93			6	0.999453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain