SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16615

Length: 1228 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16615

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15444	30/154
SustainPine v2.0	sp_v2.0_unigene19878	116/154
SustainPine v2.0	sp_v2.0_unigene76842	1/154
SustainPine v2.0	sp_v2.0_unigene77912	1/154

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO	-	-	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	40s ribosomal protein	-	-	97%

Source	GOs	Term	Type	e value	Identity
Blast2go	ribosome	GO:0005840	Cellular Component	0.0	97%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	97%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S4/S9, N-terminal	IPR001912	-	-
Sma3	Ribosomal protein S4/S9, eukaryotic/archaeal	IPR005710	-	-
Sma3	Ribosomal protein S4, conserved site	IPR018079	-	-
Sma3	RNA-binding S4 domain	IPR002942	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMP0

Fln msg:

Fln protein: MVHVNFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRNKRELWRVQYTLSRIRNAARMLLTLDEKNPRRIFEGEALLRRMNRYGLLDETQSKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNLKAASKKAAGGDGEEEDEE*

Protein Length: 199

Fln nts: CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCAATTTTTAGGGTTTTGTGGGAAGGAATAGGGTTTTTCATATTGGATACAATTCACCAGCGGGAGGTTTTGTTTCGTTGGTGCGAGAGTCCGGGAGAGGAGGAAGAGCAGCAGCGGAGGAGGAAAG_-_ATGGTGCACGTCAATTTTTACCGCAACTATGGGAAGACGTTCAAGAAGCCCCGGCGGCCCTACGAGAAGGAGAGGCTGGATGCAGAACTGAAATTGGTTGGAGAATACGGGCTGCGAAATAAGAGAGAACTCTGGAGGGTTCAATACACGTTGAGCCGCATACGAAATGCAGCGCGTATGCTTCTGACGCTGGACGAGAAAAACCCTCGCCGTATATTCGAAGGAGAAGCCCTGCTGCGGCGTATGAACAGGTATGGTCTACTGGACGAGACTCAAAGCAAGCTCGATTACGTCCTCGCTCTCACCGTTGAGAACTTCCTCGAGCGCCGCCTTCAGACTCTCGTCTTCAAATCAGGCATGGCCAAGTCCATCCATCATGCTCGTGTTCTCATCCGGCAACGCCACATTAGGGTTGGTAGGCAAGTTGTGAATATTCCGTCTTTCATGGTAAGAGTTGATTCACAAAAGCACATTGATTTCTCACTTACAAGTCCTCTTGGTGGGGGACGTCCTGGTCGTGTGAAACGAAAGAACTTGAAGGCAGCGTCAAAGAAGGCTGCTGGTGGAGATGGTGAGGAAGAGGACGAGGAATGA___GGCGTAGCAGCATTAGCAGCCAAGAAAAGTTATCTGCACAATCTCTTCTTCTGTGTGAAGCTTTTAGATTTTGTTAAAAGAATGTTATTAGCTGGATTTTCTGGTTGCTACAACAACTGGTTGTGAAACTTTGTTGATAGGTTTGCATAAATTATAAATTTGGCAATAGTGAGCATGCATTTAAATTTTGTCGGATTACTGGCTGGTGCAACATGTTTGGTTTGTTAAACATTCGTACTAGGTTAGAATACACTTCAAAATTTGCTGGAGTTTGATCACAGTCCAGAGCTCTGTGGCAGTAAACAACAAATGTTGATCTATTTCATTCCGGTTACCGAAAATTTAAAATTTTGCACATTTAATTATGTTGTAGTAATGTCATGTGTTGCTCGTGTATTTTAAATTTGGCAATAGTCAAGCATGCATTTTTAAATTGTCATTTTACTGGATGCTGCAAGATGTTTGG

Fln Alignment:

Contig16615___MVHVNFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRNKRELWRVQYTLSRIRNAARMLLTLDEKNPRRIFEGEALLRRMNRYGLLDETQSKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNL
A9NMP0________________MVHVNFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRNKRELWRVQYTLSRIRNAARMLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQSKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNM

SNPs (tot: 63)

Position	A %	C %	G %	T %	Probability
62			85	14	0.993533
63		14	85		0.993533
65	85	14			0.993533
66			85	14	0.993533
67		14	85		0.993533
93	63			36	1.0
94	63	36			1.0
95			36	63	1.0
97		63	36		1.0
102	75	5	10	10	0.999571
104		85	10	5	0.999793
105		10	85	5	0.999793
106		11	58	11	1.0
107	11	11	64	11	1.0
108	76	2	2	8	0.999996
109	2	11	73	5	1.0
110	5	5	73	11	1.0
111		17		82	1.0
113	2	8	11	76	1.0
114	5		2	91	0.995912
115		8	83	8	0.999996
116	8			89	0.999999
117		10		89	1.0
123			51	48	1.0
156	50		50		1.0
159	50		50		1.0
160	50		50		1.0
161	50		50		1.0
194		51		48	1.0
290		48		51	1.0
423		5		92	0.991359
426		5	92	2	0.992495
509	38			53	1.0
569	90			10	0.90298
572		40		60	1.0
574	90	10			0.90298
576	77	11	11		0.968132
578			11	88	0.923564
579	88	11			0.923564
581		11	77	11	0.968132
583	12			87	0.992554
584		12		87	0.992554
585	12		87		0.992554
593	72	18	9		0.999994
596		18		81	0.999994
601	72	18		9	0.999994
602		18		81	0.999994
603	81			18	0.999994
604			18	81	0.999994
605			18	81	0.999994
607		81		18	0.999994
611	18			81	0.999994
612		18		81	0.999994
790	83		11	5	0.999887
791	88			11	0.999937
792	83	11	5		0.999887
796	88		11		0.999937
976		43		56	1.0
1002		50	50		1.0
1044	47			52	1.0
1048		47		52	1.0
1082		46		53	1.0
1093		40		60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain