SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16500

Length: 1170 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16500

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4283	16/45
SustainPine v2.0	sp_v2.0_unigene5494	23/45
SustainPine v2.0	sp_v2.0_unigene64093	5/45

Source	Descriptions	Term	Type	Identity
AutoFact	Putative inositol transporter (Fragment) n=1 Tax=Vitis vinifera RepID=D7TKB0_VITVI	-	-	49%
FL-Next	sp=Probable inositol transporter 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	55%
Blast2go	probable inositol transporter 2-like	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	myo-inositol transport	GO:0015798	Biological Process	72%
Blast2go	signaling	GO:0023052	Biological Process	72%
Blast2go	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	72%
Blast2go	myo-inositol:hydrogen symporter activity	GO:0005366	Molecular Function	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	72%
Blast2go	pollen tube	GO:0090406	Biological Process	72%

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Plexin/semaphorin/integrin	IPR003659	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Full-Lengther Next Prediction

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
155	60	40			1.0
159		60	40		1.0
160	60			40	1.0
161			40	60	1.0
162	40			60	1.0
163		40	60		1.0
167		87		12	0.999964
173		87		12	0.999964
174			12	87	0.999964
179	26			73	1.0
180	13	13	73		0.999956
181	13			86	0.999973
182		86	13		0.999973
184	6	73	13		0.999956
186		73		26	1.0
187	66	20			1.0
466		80		20	1.0
571	88			11	0.923564
572	88	11			0.923564
573		11	88		0.923564
574		11		88	0.923564
575	85			14	0.993533
578		14	85		0.993533
798		80		20	0.995493
799			20	80	0.995493
802	20			80	0.995493
803	80			20	0.995493
805			66	33	1.0
806			66	33	1.0
809	66	33			1.0
812	66			33	1.0
814	66	33			1.0
815	33			66	1.0
963	66		33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain