SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene15513

Length: 901 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene15513

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24219	40/41

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glucose 6-dehydrogenase, putative n=4 Tax=Magnoliophyta RepID=B9REG0_RICCO	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	udp-glucose 6- expressed	-	-	94%

Source	InterPros	Term	Type	Identity
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Nucleotide sugar dehydrogenase	IPR017476	-	-
Sma3	UDP-glucose/GDP-mannose dehydrogenase, C-terminal	IPR014027	-	-
Sma3	UDP-glucose/GDP-mannose dehydrogenase, dimerisation	IPR014026	-	-
Sma3		IPR014028	-	-
Sma3	UDP-glucose/GDP-mannose dehydrogenase, N-terminal	IPR001732	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPB2

Fln msg: Overlapping hits, possible frame ERROR between 751 and 751, and possible frame ERROR between 840 and 843, Distance to subject end: 231 aas, your sequence is shorter than subject: 250 - 482

Fln protein: MVKICCIGAGYVGGPTMAMIALKCPEIEVVVVDISVSRINAWNSDRLPIFEPGLEEVVRLCRGKNLFFSSDVEKHVAEAEIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNNKGIHFQILSNPEFLAEGTAIEDLEKPDRVLIGGRETAEGQKAVAALKAVYAHWVxxDRIITMNLWSAELSKLAANAFLAQRISSxxAMSALCEATGADVAEVAYA

Protein Length: 251

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTCTGACCGACACTGCCCAACGCATATAAACCCGTCGTGACCTTGGCTGTCACTCAATTGTGTTCGTTGGTGCATCTGGTCGTTCTTTCTTTCCATTGAGCGTTCCTTAGTTTCGAACTCGCGACC_-_ATGGTGAAGATCTGCTGCATCGGGGCAGGGTACGTGGGCGGGCCGACGATGGCCATGATCGCACTCAAATGCCCGGAGATCGAAGTGGTAGTGGTGGACATCTCTGTATCGCGTATCAACGCCTGGAATAGCGACCGCCTGCCGATATTCGAACCCGGGCTGGAGGAGGTCGTCCGGCTCTGCCGCGGCAAGAATCTCTTCTTCAGCTCCGACGTCGAGAAACACGTTGCGGAAGCGGAGATAGTGTTCGTCTCCGTCAACACGCCTACCAAGACCCGTGGGCTCGGCGCCGGCAAGGCAGCCGACCTGACCTACTGGGAATCGGCCGCCCGGATGATCGCGGACGTGTCGAAGTCGGACAAGATTGTTGTGGAGAAATCGACGGTGCCGGTGAAAACCGCAGAAGCGATCGAGAAGATTCTCACCCACAACAACAAGGGGATCCACTTTCAGATATTATCTAACCCCGAATTTCTGGCCGAGGGGACCGCCATTGAAGATCTGGAGAAGCCCGACAGGGTTTTGATAGGCGGGCGGGAGACCGCAGAGGGCCAGAAGGCCGTCGCGGCGCTGAAGGCGGTTTATGCTCACTGGGTAxxxxxxGACCGAATCATAACCATGAATCTCTGGTCCGCTGAGCTCTCGAAGCTGGCCGCGAATGCTTTCTTGGCGCAGAGGATTTCGTCCGxxxTTGCCATGTCCGCCCTCTGCGAGGCCACAGGGGCCGACGTGGCTGAAGTCGCATATGCTGT

Fln Alignment:

Contig15513___MVKICCIGAGYVGGPTMAMIALKCPXXXXXXXXXXXXRINAWNSDRLPIFEPGLEEVVRLCRGKNLFFSSDVEKHVAEAEIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNNKGIHFQILSNPEFLAEGTAIEDLEKPDRVLIGGRETAEGQKAVAALKAVYAHWVPEDRIITMNLWSAELSKLAANAFLAQRISSVxAMSALCEATGADVAEVAYA
B8LPB2________________MVKICCIGAGYVGGPTMAMIAFKCPEIEVVVVDISVSRINAWNSDRLPIFEPGLEEVVRVCRGKNLFFSSDVEKHVAEAEIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNNKGIHFQILSNPEFLAEGTAIEDLEKPDRVLIGGRETAEGQKAVAALKAVYAHWVPDDRIITMNLWSAELSKLAANAFLAQRISSVxAMSALCEATGADVAEVAYA

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
59	12		87		0.992554
64		12	87		0.992554
65	87	12			0.992554
68		12		87	0.992554
69		12		87	0.992554
70	12		75	12	0.975346
71			87	12	0.992554
73		10		90	0.90298
76	10	90			0.90298
78		90	10		0.90298
80		80	20		0.999996
81	90			10	0.90298
82	90	10			0.90298
85			90	10	0.90298
88		10		90	0.90298
93		10		90	0.90298
94	10		90		0.90298
95		10	90		0.90298
220	70		29		1.0
330	43	3		53	1.0
481		90		10	0.90298
484		10	90		0.90298
544	33		66		0.997452
579		75	25		0.996473
580	75			25	0.996473
582	75		25		0.996473
583	75			25	0.996473
584		75	25		0.996473
586	66	33			0.997452
588	66			33	0.997452
589	66			33	0.997452
592		33	66		0.997452
593			66	33	0.997452
594	66		33		0.997452
599	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain