SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene15117

Length: 837 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene15117

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22616	39/40

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_1.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=E0CQ58_VITVI	-	-	76%
FL-Next	tr=Putative neutral invertase; Vitis vinifera (Grape).	-	-	54%
Blast2go	neutral invertase-like protein	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-fructofuranosidase.	EC:3.2.1.26	-	0.0	87%

Source	KEGGs	Term	Type	Identity
Blast2go	Galactose metabolism	00052		87%
Blast2go	Starch and sucrose metabolism	00500		87%
Blast2go	Metabolic pathways	01100		87%
Blast2go	Sucrose alpha-glucosidase.	EC:3.2.1.48	-	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	87%
Blast2go	Metabolic pathways	01100		0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	sucrose catabolic process, using invertase or sucrose synthase	GO:0010131	Biological Process	87%
Blast2go	root development	GO:0048364	Biological Process	87%
Blast2go	sucrose alpha-glucosidase activity	GO:0004575	Molecular Function	87%
Blast2go	cytosol	GO:0005829	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR006937	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
251	84		5	10	0.999846
253		5	10	84	0.999846
258	5	10		84	0.999846
259	10	5	84		0.999846
260		15	84		1.0
399	66	8		8	0.999991
400	66	8	8	16	0.999991
402	72	9		18	0.999994
403	81	18			0.999994
405		20		70	0.999998
406			12	87	0.992554
407	12			87	0.992554
411			14	85	0.993533
412	14			85	0.993533
413		14	85		0.993533
415	85		14		0.993533
417		14		85	0.993533
418	85	14			0.993533
430	75		25		1.0
433	75	25			1.0
434	75		25		1.0
440	75		25		1.0
441	75	25			1.0
442	75			25	1.0
444	75			25	1.0
447		25		75	1.0
448			75	25	1.0
449		25		75	1.0
450	25			75	1.0
529		87	12		0.992554
645			20	80	0.995493
646			80	20	0.995493
648	80		20		0.995493
651	20			80	0.995493
654	80			20	0.995493
655			80	20	0.995493
657	80		20		0.995493
658	80	20			0.995493
662	80			20	0.995493
663		20	80		0.995493
666	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain