SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14921

Length: 1441 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene14921

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18926	90/95
SustainPine v2.0	sp_v2.0_unigene79021	1/95

Source	Descriptions	Term	Type	Identity
AutoFact	protein transmembrane nine 7 [Arabidopsis thaliana] dbj\|BAB01926.1\| multispanning membrane protein-like [Arabidopsis thaliana] gb\|AEE75410.1\| protein transmembrane nine 7 [Arabidopsis thaliana]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	endosomal p24a protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	cellular zinc ion homeostasis	GO:0006882	Biological Process	88%
Blast2go	cellular copper ion homeostasis	GO:0006878	Biological Process	88%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	88%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	88%
Blast2go	nucleus	GO:0005634	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nonaspanin (TM9SF)	IPR004240	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC25

Fln msg: Distance to subject end: 220 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 127 - 370

Fln protein: MVAMIMMRTLYRDISNYNQLETQDEAQEETGWKLVHGDVFRSPSNAGLLCVYAGTGVQFFGMTLVTMIFAMLGFLSPSNRGGLMTAMVLLWVFMGLFAGYSSARLYKMFKGTEWKTNTLKTALPSQA

Protein Length: 128

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATGTGGTCGCGTCGTGACCTTGGCTGTCACTCGTATCTGTTCAGGGTCAGATCTGGGAGTATTCAGAATCAGATCTGTTTATATTTATGTTGAGAACAAACTAATTTGTGATTGTTCATTTGGGTTTTGTGGTTCTCAAGGGCTCTTCCAAGTTGAGCCCTCACTCAATGGCTTCTGGGGAGTTTGTTTGCGCTCTGCTACTTGTATTTTTAGTCTCAGCTGCAAATTGCTTCTATCTTCCTGGTGTAGCCCCTCAGGACTTCAACAAGGGTGATGAGCTCCAGGTTAAAGTGAACAAGCTGTCTTCCATAAAGACACAGCTTCCTTATGATTATTATTCACTGAATTACTGTAAACCAAAAACAATTGTCAACAGTGCCGAGAATCTCGGAGAAGTTCTTCGCGGAGATCGCATTGAGAACTCTCCTTATGTATTTCACATGAGAGAGGAGAAGCTCTGTAATTATGTATGCCGGATAAAGCTGGATGCAAAGTCAGCAAAGAACTTCAAGGAGAAAATAGATGACGAATATCGTGTTAATATGATTCTGGACAATCTACCCGTGGCTGTAGCCAGACAAAGAGCAGATGGAACTCTAGTTACTTCATATGAACATGGCTTCCGTGTTGGGTTTAAAGCTAGCTATGCAGGGAGTACAGAAGAGAGATACTTTATACACAACCATCTATCTTTCGAGGTTAAGTTTCACAAAGATTCAGAGGCTGATTCTGCTAGGATTGTTGGATTTGAAGTCACACCATATAGCGTCAAGCATGAGTTTGAGCAACCTTGGTCTGAGGATAATCCCCGTTTGACAACCTGCAACCCAAACACCAAACACTACGTTCACAAACCAATAGTCCACAAGAAGTTGACGAGGTAAAGATATTATATTTACTTACGATGTGTCATTCAAGGAAAGCCCTATCAAATGGGCTTCTCGATGGGATACATATCTTCTCATGACAGATGATCAGATCCACTGGTTCTCCGTCGTGACCTTGGCTGTCACTCTGTCTTGTTCCTTTCTGGG_-_ATGGTGGCAATGATTATGATGAGAACCTTGTATCGGGATATCTCAAATTATAATCAATTGGAGACACAGGATGAAGCCCAAGAAGAAACTGGATGGAAGCTTGTCCATGGAGATGTATTCAGGTCCCCAAGTAATGCAGGTTTACTATGTGTCTATGCAGGAACTGGGGTACAGTTTTTTGGGATGACACTTGTTACAATGATATTTGCCATGCTTGGGTTTCTTTCACCATCCAATCGTGGTGGACTGATGACAGCTATGGTTCTCTTGTGGGTGTTCATGGGTTTGTTTGCTGGTTACTCTTCTGCTCGTCTGTATAAGATGTTCAAGGGCACAGAATGGAAAACAAACACGCTGAAGACTGCGTTACCTTCCCAGGCAT

Fln Alignment:

Contig14921___VLFLSGMVAMIMMRTLYRDISNYNQLETQDEAQEETGWKLVHGDVFRSPSNAGLLCVYAGTGVQFFGMTLVTMIFAMLGFLSPSNRGGLMTAMVLLWVFMGLFAGYSSARLYKMFKGTEWKTNTLKTA
D5AC25________________VLFLSGMVAMIMMRTLYRDISKYNQLETQDEAQEETGWKLVHGDVFRPPTHSSLLCVYVGTGVQFFGMTLVTMIFAMLGFLSPSNRGGLMTAMVLLWVFMGLFAGYSSARLYKMFKGSEWKKNTLKTA

SNPs (tot: 68)

Position	A %	C %	G %	T %	Probability
36			66	33	0.997452
37	33			66	0.997452
38	33	66			0.997452
42	33		66		0.997452
48	33			66	0.997452
51		33	66		0.997452
52		66	33		0.997452
53	33			66	0.997452
54	33		66		0.997452
60		66		33	0.997452
62	4	8	87		0.999414
63	8			91	0.999766
127	87	3		9	1.0
128	87		12		1.0
132	90	3		6	0.997544
133	90	3	6		0.997544
134		6	6	87	0.993531
135		6		93	0.999264
139		6	93		0.999264
142	6			93	0.999264
409		83		16	0.994512
410			83	16	0.994512
411	83	16			0.994512
413	80	20			0.995493
464			25	75	0.996473
509	93			6	0.999264
510	90	9			1.0
533	87	4			0.999414
753		87		12	0.992554
762	12	87			0.992554
764	87	12			0.992554
796	14	85			0.993533
1026		50		50	1.0
1027	50		50		1.0
1029		50		50	1.0
1030	50		50		1.0
1032		50	50		1.0
1034	50	50			1.0
1037		50		50	1.0
1038	50		50		1.0
1039			50	50	1.0
1040		50		50	1.0
1041	50			50	1.0
1042	50		50		1.0
1044		50	50		1.0
1049	25	25		50	0.995533
1050	25		75		0.996473
1073		16	83		0.994512
1075		83		16	0.994512
1076	83	16			0.994512
1077	83		16		0.994512
1081		16		83	0.994512
1083	83			16	0.994512
1084			16	83	0.994512
1086	83	16			0.994512
1089	83			16	0.994512
1090		16	83		0.994512
1092	83			16	0.994512
1094	16	83			0.994512
1223		28		71	1.0
1227	71		28		1.0
1228			71	28	1.0
1231	71	28			1.0
1238			66	33	1.0
1244	66			33	1.0
1245		16	83		0.994512
1246	20			60	0.99255
1326	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain