SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14616

Length: 431 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene14616
CGTCGTGACCTTGGCTGTCACTCATGTTTGTTTTACTGCGATCTTTGTTGTAAGAAATGCGACGGTTGTGTTCCCAGGGGGCAGTACGGAAATAAAGACGAGTGCCCCTGCTACAGGGATATGAAGTCCTCAGCCGGCAAACCCAAGTGTCCCTGATCTATGAAGTCCTCGGCCGGCAAACCCAAGTGTCCCTGATCTCTTCAGACTGGTCACTCACTTGTTTTAGTTTTTGGGTTTCTTCCCCTCTACAGCGTGGGGCTGCTACTCCTATGTTAGGAGAAGTAGCAGTGGTAATAAGAACAGCATTAAGCTCATGGCATTTTTAGGGTTAAGTATCCATCTTTTGTTTAGGGTTAAGGAAACACATTCACATGTATTCTCTAACCTAATGTGTTAGTTAAATAATTTAATAAATTGGTCGTGGCTCGCTT

Ace file of the UniGene uagpf_v2_unigene14616 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11580	14/14

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Contains similarity to gibberellin-stimulated transcript 1 like protein n=3 Tax=Arabidopsis RepID=Q8LFM2_ARATH	-	-	2.0e-14	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	gibberellin-regulated protein	-	-	4.8716e-20	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to gibberellin stimulus	GO:0009739	Biological Process	4.8716e-20	80%
Blast2go	endomembrane system	GO:0012505	Cellular Component	4.8716e-20	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Anaphylatoxin/fibulin	IPR000020	-	0.0	-
Sma3	Gibberellin regulated protein	IPR003854	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NP73

Fln msg: your sequence is shorter than subject: 52 - 111

Fln protein: RRDLGCHSCLFYCDLCCKKCDGCVPRGQYGNKDECPCYRDMKSSAGKPKCP*

Protein Length: 53

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTTGTTTTACTGCGATCTTTGTTGTAAGAAATGCGACGGTTGTGTTCCCAGGGGGCAGTACGGAAATAAAGACGAGTGCCCCTGCTACAGGGATATGAAGTCCTCAGCCGGCAAACCCAAGTGTCCCTGA___TCTATGAAGTCCTCGGCCGGCAAACCCAAGTGTCCCTGATCTCTTCAGACTGGTCACTCACTTGTTTTAGTTTTTGGGTTTCTTCCCCTCTACAGCGTGGGGCTGCTACTCCTATGTTAGGAGAAGTAGCAGTGGTAATAAGAACAGCATTAAGCTCATGGCATTTTTAGGGTTAAGTATCCATCTTTTGTTTAGGGTTAAGGAAACACATTCACATGTATTCTCTAACCTAATGTGTTAGTTAAATAATTTAATAAATTGGTCGTGGCTCGCTT

Fln Alignment:

Contig14616___CLFYCDLCCKKCDGCVPRGQYGNKDECPCYRDMKSSAGKPKCP
A9NP73________________CLKYCGICCSSCQ-CVPPGTYGNKNACPCYRDMKNAKGKPKCP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
309			23	76	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain