SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14448

Length: 957 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene14448

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18663	9/33
SustainPine v2.0	sp_v2.0_unigene32268	23/33

Source	Descriptions	Term	Type	Identity
AutoFact	Exostosin family protein [Arabidopsis thaliana] sp\|Q940Q8.1\|IX10L_ARATH RecName: Full=Probable beta-1,4-xylosyltransferase IRX10L; AltName: Full=Glucuronoxylan glucuronosyltransferase 1; Short=AtGUT1; AltName: Full=Glucuronoxylan glucuronosyltransferase 2	-	-	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	probable beta- -xylosyltransferase irx10l-like	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	glucuronoxylan biosynthetic process	GO:0010417	Biological Process	94%
Blast2go	secondary cell wall biogenesis	GO:0009834	Biological Process	94%
Blast2go	glucuronoxylan glucuronosyltransferase activity	GO:0080116	Molecular Function	94%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Exostosin-like	IPR004263	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1W4

Fln msg: Overlapping hits, possible frame ERROR between 343 and 123, your sequence is shorter than subject: 234 - 420

Fln protein: VVTLAVTHVCLKEGSITVPPYAPPQKMQAHLIPS*PWLSLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVIFGCIPVIIADDIVLPFADAIPWEEIGVFVAEKDVPNLDTILTSIPPEVILRKQRLLANPAMKQAMLFPQPAQPGDAFHQILNGLARKLPHDSSIYLKPNQKILNWTAGPPADLKPW*

Protein Length: 235

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTCTGCTTGAAGGAAGGCTCAATCACAGTTCCACCTTATGCTCCTCCACAAAAGATGCAGGCACACTTGATACCGTCGTGACCTTGGCTGTCACTCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTGATATTCGGTTGTATTCCAGTCATTATAGCCGATGATATTGTGCTACCTTTTGCTGATGCCATACCCTGGGAAGAAATTGGGGTGTTTGTAGCTGAAAAAGATGTACCTAACCTGGACACTATTCTTACATCTATTCCACCAGAGGTCATATTGAGGAAGCAGCGATTGCTCGCTAATCCTGCCATGAAGCAGGCCATGCTGTTTCCGCAACCTGCTCAACCAGGAGATGCCTTCCATCAGATTTTGAATGGTCTAGCCCGCAAATTGCCTCATGATAGCAGTATTTACTTGAAACCTAATCAAAAGATTTTGAACTGGACAGCAGGCCCTCCTGCTGATCTAAAGCCATGGTAGCATATACACATTGTGTAATCAAATTGCCAATGTACCTTCACTTAACACCTCAAGATGAGTTTTAAGGCAATAGCCATTCTATTCTTTTGTAGCTTATCATTTATAAGTTATCTTCAGACAACATATAAGTTTCCTTTGTATACTATTTTTAAGAATTACTGACATTGTACAATAGCTGTGGTTAGAGTTTTACAAGTCATATCCTACTTTAGATCCTCGATGCTGTACAGTGAAGATCTCAGGGTAATAATTACAG

Fln Alignment:

Contig14448___HVCLKEGSITVPPYAPPQKMQAHLIPS*PWLSLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVIFGCIPVIIADDIVLPFADAIPWEEIGVFVAEKDVPNLDTILTSIPPEVILRKQRLLANPAMKQAMLFPQPAQPGDAFHQILNGLARKLPHDSSIYLKPNQKILNWTAGPPADLKPW
A9P1W4________________HVCLKKGSITVPPYAPPQKMQAHLIPPSTPRSIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVIFGCIPVIIADDIVLPFADAIPWEEIGVFVAEKDVPNLDTILTSIPPEVILRKQRLLANPAMKQAMLFPQPAQPGDAFHQILNGLARKLPHDSSIYLKPNQKILNWTAGPPGDLKPW

SNPs (tot: 77)

Position	A %	C %	G %	T %	Probability
119	25	75			0.996473
123	50		25		0.995533
126	25			75	0.996473
127		25		75	0.996473
128		25	75		0.996473
131			25	75	0.996473
132	75		25		0.996473
135			25	75	0.996473
139		25	75		0.996473
141		25	75		0.996473
142	25		75		0.996473
268		20		80	0.995493
269	80		20		0.995493
271			20	80	0.995493
273		60		40	1.0
274		20	80		0.995493
275	80			20	0.995493
276			80	20	0.995493
278	80		20		0.995493
287			80	20	0.995493
289	25		75		0.996473
336	50	16		33	1.0
338	66		16	16	0.988813
340		16	16	50	0.988986
343	16			83	0.994512
344		83	16		0.994512
345		16	66		0.988813
346	66	16		16	0.988813
347	50	16		33	1.0
348			83	16	0.994512
349		16	66	16	0.988813
350	16	33			1.0
351	83			16	0.994512
352		16	83		0.994512
354		33	66		1.0
420		85	14		0.993533
423			85	14	0.993533
426	85	14			0.993533
427		14	85		0.993533
428	85			14	0.993533
429	85			14	0.993533
430	85		14		0.993533
434			85	14	0.993533
435		14	85		0.993533
436	14		85		0.993533
437		14	85		0.993533
439	14		85		0.993533
442		12		87	0.992554
445	87	12			0.992554
451	85	14			0.993533
452	85			14	0.993533
453	85			14	0.993533
454	85		14		0.993533
456	85	14			0.993533
476	80	10			0.99967
477		5	15	80	1.0
481		5	10	85	0.999793
484	90			10	0.999898
486		90	10		0.999898
487			10	90	0.999898
488	90	10			0.999898
490			10	90	0.999898
491		90		10	0.999898
573	90		9		0.999842
574	90			9	0.999842
576		90	9		0.999842
577	90			9	0.999842
579	9		90		0.999842
580	90	9			0.999842
581		9	90		0.999842
582	90			9	0.999842
585		90	9		0.999842
590	9	90			0.999842
591	90	9			0.999842
793		60		40	1.0
794		40		60	1.0
795			12	87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain