SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14306

Length: 1037 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene14306

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16818	46/48
SustainPine v2.0	sp_v2.0_unigene66739	1/48

Source	Descriptions	Term	Type	Identity
AutoFact	Os07g0673500 protein n=2 Tax=Oryza sativa Japonica Group RepID=Q0D3Q1_ORYSJ	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	pre-mrna-splicing factor sf2	-	-	83%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PR09

Fln msg: Distance to subject end: 117 aas, your sequence is shorter than subject: 280 - 398

Fln protein: MRRSNSTIYVGNLPGDIRESEIEDLFYKYGRIIDIDLKLPPRPPGYCFIEFDNSRDAEDAIRGRDGYKFDGHRLRVERAHGGRASSVEAYGSYSSGSHSSSLYRRTGYRVIVHGLPSSASWQDLKDHMRRAGDVCFSQVYRKSSGTVGVVDYTSYEDMKYAIRKLDDSEFRNPFSRSYIRVKEDKGHRSSYSRSRSRSYSRSPSYDYYRRGYRGRSCSRSYSRSYSERSARSYDSRQSRSRSRSRSPSVYSRSRSRSVSKSAYSPSRKSYSRSISRSRSR

Protein Length: 281

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTAGCAATTTTGTTTTAGAAGAGGAGAGAAAAACAGAGAGGCACGAGCAGTTGGGGTTTTGCGTCGCCAGGTCCTGCTTCGAATTCGTTAGAGCATATTTTAGATCTTATATCTGGTTCTTTCCTGAGGGTAGTTGTGATCAGCACGACTATCATCCCTAGAAAACTACA_-_ATGAGAAGATCAAACAGCACAATTTATGTTGGCAATCTTCCTGGTGACATACGTGAGAGTGAGATTGAAGATCTGTTTTACAAGTATGGACGAATCATAGACATTGATTTGAAGTTGCCACCACGTCCACCCGGTTATTGTTTCATTGAGTTTGATAATTCTCGAGATGCAGAGGATGCAATCAGAGGCAGAGATGGCTACAAATTTGATGGACATAGACTCCGGGTTGAGAGGGCTCATGGAGGGCGAGCATCATCTGTTGAAGCGTATGGTAGCTACTCTAGTGGTAGTCATTCGAGTAGTTTGTATCGGCGTACTGGATACAGAGTTATTGTGCATGGACTACCTAGCTCTGCATCATGGCAAGATTTGAAGGATCACATGCGCCGTGCTGGTGATGTGTGCTTTTCTCAAGTTTACCGCAAAAGCAGTGGCACTGTGGGAGTTGTAGACTACACAAGCTACGAGGATATGAAATATGCTATAAGAAAGCTTGATGATTCAGAGTTTCGCAATCCATTTTCTCGATCTTACATAAGGGTTAAGGAAGATAAAGGACATCGCAGTAGTTATTCTAGAAGCCGCAGTCGAAGTTACAGCCGCAGTCCAAGCTATGACTATTACAGGCGAGGATACCGAGGGCGCAGTTGTTCTCGAAGTTACTCAAGAAGCTACAGCGAGAGAAGTGCTAGAAGTTACGATTCTCGTCAGAGTCGTAGTCGAAGCCGCTCTAGAAGCCCGTCTGTATATTCAAGATCACGATCAAGATCAGTCTCAAAAAGTGCATACTCCCCAAGTCGTAAATCTTACTCCCGTTCGATATCACGTTCACGCTCACGTT

Fln Alignment:

Contig14306___MRRSNSTIYVGNLPGDIRESEIEDLFYKYGRIIDIDLKLPPRPPGYCFIEFDNSRDAEDAIRGRDGYKFDGHRLRVERAHGGRASSVEA-XXXXXXXXXXXXLYRR-TGYRVIVHGLPSSASWQDLKDHMRRAGDVCFSQVYRKSSGTVGVVDYTSYEDMKYAIRKLDDSEFRNPFSRSYIRVKEDK
C0PR09________________MKRSNSTIYVGNLPGDIRESEIEDLFYKYGRIIDIDLKLPPRPPGYCFIEFDNARDAEDAIRGRDGYKFDGHRLRVERAH-GRASSVDVYYGSHSSGSRSSGLYRRSTGYRVIVHGLPTSASWQDLKDHMRRAGDVCFSQVYRKGSGTVGVVDYTSYEDMKYAIRKLDDSEFRNPFSRSYIRVREDK

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
118	80	20			0.995493
121	80		20		0.995493
124		20		80	0.995493
125		14		85	0.993533
131			14	85	0.993533
135	85		14		0.993533
137	85	14			0.993533
138	14			85	0.993533
141		14	85		0.993533
142	14		85		0.993533
318		85	14		0.993533
319	85			14	0.993533
323		71		14	0.984337
324		85	14		0.993533
325	85		14		0.993533
327		83	16		0.994512
329		83		16	0.994512
333	16	16		66	0.988813
334		16		83	0.994512
335	50	33	16		1.0
336			16	83	0.994512
337	11	22	11	55	0.999999
338		12	87		0.992554
339		12		87	0.992554
340		12	25	62	1.0
341	12			87	0.992554
342		87	12		0.992554
345		12		87	0.992554
346	12		87		0.992554
349		14		14	0.984337
351			14	85	0.993533
353		14	85		0.993533
356	85	14			0.993533
422	16	83			0.994512
483			10	90	0.90298
484	90			10	0.90298
486	10			90	0.90298
487		10	90		0.90298
488		10	90		0.90298
490	90			10	0.90298
492			10	90	0.90298
494	90			10	0.90298
495			10	90	0.90298
500		10	90		0.90298
502	90	10			0.90298
503	10		90		0.90298
900		54		45	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain