SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13995

Length: 1667 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene13995

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13585	77/120
SustainPine v2.0	sp_v2.0_unigene21455	24/120
SustainPine v2.0	sp_v2.0_unigene26114	3/120
SustainPine v2.0	sp_v2.0_unigene31412	7/120
SustainPine v2.0	sp_v2.0_unigene61139	2/120
SustainPine v2.0	sp_v2.0_unigene78899	3/120

Source	Descriptions	Term	Type	Identity
AutoFact	Rab family GTPase n=3 Tax=Selaginella moellendorffii RepID=D8RE14_SELML	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	rab family gtpase	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	protein transport	GO:0015031	Biological Process	92%
Blast2go	small GTPase mediated signal transduction	GO:0007264	Biological Process	92%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	92%
Blast2go	GTP binding	GO:0005525	Molecular Function	92%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3		IPR015595	-	-
Sma3		IPR013753	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV29

Fln msg:

Fln protein: MAYKVDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSINVDGKMIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRHVTFENVERWLKELRDHTEHNIVVMLVGNKSDLRHLRAVSTEDAQTFAEREGLYFIETSALESTNVENAFKQVLTQIYRIVSKKALDVSEDNAAAPAQGQTINVKDDVTATKKVGCCSTS*

Protein Length: 218

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGATTATTGTTTCGCAGGATTTAGCCAAGTGCATCTGGCTACAGATTTTCTCATCTCCAAGGCTGCCAGAACTCAAATCTGATCGCAGACGACTCTCTCCTTTGGTCATTTTTGGGGGCTTTTGGGTGTTTATTGCGGACACCCAATGCTCAAAGATCTGGATCCAATACAACGCGTCGGTTTGATATTCAGCGTGTATCCGTCCATTCAACGGGAGATTGGGTTTCTGCGATACATTCATTTTGTATCCATCCAACAGTTATTGGGCGTCTGCAATAGGGCGATATTCATTATCTATCCCTTGAACCAGCTATTGGGTTCACCCAATAAGCCAATATTCATCGTGTATCCATTGAAAGGCTATTATTTTTCTGCAATAGCTTGATATCCATTGTGTATCCATCCGACCATATATTGGGTGTCTATAATAGGCCGATATTCATTATCTACCCATTGAACCGGCTATTGGGTTTCTGCTATAAGGGGAAATTAACTGCGCAGCTATTCATTCAGGTTTTGGGTTCTTGAGCACACCCAAGAGTTCGTTTGGTGCTGTGTGGAG_-_ATGGCTTACAAAGTCGATGATGATTATGACTATTTGTTTAAGGTGGTCCTGATTGGGGATTCTGGTGTCGGTAAGTCCAATTTGCTCTCCAGATTTACTAGAAATGAATTCAGCCTGGAGTCCAAATCTACAATTGGTGTGGAGTTTGCAACACGGAGCATTAATGTTGATGGGAAAATGATCAAGGCCCAGATATGGGACACTGCTGGTCAGGAAAGGTACAGAGCCATCACAAGTGCATATTATCGCGGTGCTGTTGGTGCATTGTTGGTTTACGACATCACTCGACATGTCACCTTTGAAAATGTTGAGAGGTGGCTCAAGGAGCTTCGTGATCATACCGAGCACAACATTGTGGTGATGCTTGTTGGGAACAAGTCCGACTTGCGCCATTTGAGGGCTGTTTCCACGGAGGATGCCCAGACCTTTGCAGAAAGAGAAGGGCTCTATTTCATAGAGACATCTGCACTAGAGTCCACCAATGTGGAAAATGCTTTCAAGCAGGTTCTGACTCAAATATACAGGATCGTTAGTAAGAAGGCTCTGGATGTTTCGGAAGATAATGCAGCAGCTCCCGCACAAGGTCAAACAATCAACGTGAAAGATGATGTCACGGCAACTAAGAAAGTTGGTTGCTGTAGCACATCATAA___GCAGCACGTGAAATCCCTCAGGATTCGGATTTCAGTTCAGATGCAGGAGTATTATGTTCATTGGAAAAACTTTGACCGATTTCTGGAATCACTTATAGTTGAATTCGAGCAGGTTCTCATTTGGTTTGATTTTAAGAGGCTTCAAAGTTGGACTCACTTAGTAACTAGTTTTAGACGGAGAGAAGAGTGTTGTAGCCAATGGTGGGTAATCTGAATTGTATATCTTATTCTTGCTGTATTCTCTGAAACTTCTAGTGTCCCAGTCTGAAACTTCTAGTGTCCCAGTACTATCTTTGTTCTAGTCAGTGGCTTCAGTTTTACATGCCATCATTTGTATCCATTATTTCATTTTATTCTCACAATGGAAGACAGATTTTTTTTGATCTTAGTTAATATTACATGGAAATATCCTTTGGTTTGATAACTTTT

Fln Alignment:

Contig13995___MAYKVDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSINVDGKMIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRHVTFENVERWLKELRDHTEHNIVVMLVGNKSDLRHLRAVSTEDAQTFAEREGLYFIETSALESTNVENAFKQVLTQIYRIVSKKALDVSEDNAAAPAQGQTINVKDDVTATKKVGCCSTS
A9NV29________________MAYKVDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSINVDGKMIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRHVTFENVERWLKELRDHTEHNIVVMLVGNKSDLRHLRAVSTEDAQTFAEREGLYFIETSALESTNVENAFKQVLTQIYRIVSKKALDVSEDNAAAPPQGQTINVKDDVTATKKVGCCSTS

SNPs (tot: 125)

Position	A %	C %	G %	T %	Probability
337	10		90		0.90298
351		77	22		0.999999
354	88			11	0.923564
356	88			11	0.923564
359		88		11	0.923564
361	77		22		0.999999
377		85		14	0.993533
388	16	83			0.994512
437	85	14			0.993533
438			28	71	1.0
441	85	14			0.993533
442			14	85	0.993533
443		14		85	0.993533
465	83			16	0.994512
466		16		83	0.994512
467			20	80	0.995493
474	25	75			0.996473
496		33	66		0.997452
498		33	66		0.997452
562	50		50		1.0
575		14		85	0.993533
576			14	85	0.993533
578		14	85		0.993533
582	14	85			0.993533
583		14		85	0.993533
584		14	85		0.993533
589			71	28	1.0
590	85	14			0.993533
591			85	14	0.993533
592	85		14		0.993533
593		12		87	0.992554
594		12	87		0.992554
595	12		75	12	0.975346
598		12	12	75	0.975346
602	87			12	0.992554
603	87			12	0.992554
605			12	87	0.992554
607			87	12	0.992554
608	87		12		0.992554
610		12	87		0.992554
613		12	87		0.992554
617	87		12		0.992554
675			81	18	0.999994
682	72	9		18	0.999994
691	83	16			0.999991
714	8	75	16		0.99999
780		53	46		1.0
920			12	87	0.992554
927		12		87	0.992554
929	87			12	0.992554
931	87		12		0.992554
932		87	12		0.992554
934			87	12	0.992554
935	87		12		0.992554
936			87	12	0.992554
938	87			12	0.992554
939		87		12	0.992554
940	75	12		12	0.975346
941	75	12	12		0.975346
942	12	87			0.992554
950		14		85	0.993533
951			85	14	0.993533
952	85			14	0.993533
953		14		85	0.993533
963			83	16	0.994512
981		85		14	0.993533
983	85		14		0.993533
985	14			85	0.993533
986		14		85	0.993533
987		14	85		0.993533
988	85			14	0.993533
989			85	14	0.993533
996		20		80	0.995493
999	20	80			0.995493
1065	83	16			0.994512
1071		83	16		0.994512
1075	80			20	0.995493
1076	80			20	0.995493
1077			20	80	0.995493
1080		25		75	0.996473
1081			75	25	0.996473
1084	75			25	0.996473
1086	75	25			0.996473
1088	75	25			0.996473
1092	20			80	0.995493
1104			40	60	1.0
1113	83		16		0.994512
1114	83			16	0.994512
1115			16	83	0.994512
1117		16		83	0.994512
1118	83	16			0.994512
1119		83		16	0.994512
1120	83			16	0.994512
1123	83	16			0.994512
1128		16		83	0.994512
1130		16	83		0.994512
1148		14		85	0.993533
1149			14	85	0.993533
1155	85	14			0.993533
1156		14	85		0.993533
1157	85			14	0.993533
1159	85		14		0.993533
1160	85	14			0.993533
1165			85	14	0.993533
1192	77		22		0.999999
1193	77			22	0.999999
1199	77	22			0.999999
1200	77	22			0.999999
1201			77	22	0.999999
1202	77			22	0.999999
1203			22	77	0.999999
1205	77	22			0.999999
1255		37	50		1.0
1279		14		85	0.993533
1351	89	8			1.0
1352		4	4	91	0.919342
1354		95		4	0.995881
1356	91		4	4	0.929335
1359	93	2		4	0.98137
1360			95	4	0.996599
1361		4	95		0.996599
1362	4	4		90	0.938371
1364		95	4		0.996599
1369		4		95	0.997218
1405		65	35		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain