SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13994

Length: 888 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene13994

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23089	50/59
SustainPine v2.0	sp_v2.0_unigene23236	1/59
SustainPine v2.0	sp_v2.0_unigene24192	3/59
SustainPine v2.0	sp_v2.0_unigene82211	1/59

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	uncharacterized protein mitochondrial-like	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	80%
Blast2go	protein binding	GO:0005515	Molecular Function	80%
Blast2go	mitochondrion	GO:0005739	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	YLP motif	IPR004019	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADA0

Fln msg: Distance to subject end: 30 aas, your sequence is shorter than subject: 249 - 280

Fln protein: MILGRALLLRPTLGISSNRGVALFTTRATFQGAFNGRVSTMGFRGGRFLGAVSTFRPKVLVLNNTRCFAANPTTSSMTDPSPNWSNRPPKETILLDGCDYEHWLIVMEPPQGNPTRDEIIDSYIKTLAQIVGSEEEARMKIYSVSTKHYYAFGCLISEELSYKLKPMENVRWVLPDSYLDPRTKSYGGEPFINGQAVPYDPKYHEDWVRNNARCNERRSNDRPRNFDRSRNFERRREMQQQARQNYQRP

Protein Length: 250

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCCTCTCCGTAGGGTTTTACATAAATAGCGTCGTGACCTTGGCTCTCACGCATGATTCGCTTATTTGTGGACGCTATTTACTACATTTCCTGCCTCTGAAACAATCGAGAACCAAG_-_ATGATATTGGGAAGGGCTCTTCTGTTGAGGCCAACGCTGGGCATCTCTTCTAACAGAGGAGTAGCACTCTTTACAACAAGGGCCACATTTCAGGGTGCCTTCAATGGCAGAGTCTCGACCATGGGGTTTCGCGGTGGGAGGTTTCTGGGAGCTGTTTCCACCTTCCGACCTAAGGTCCTAGTCCTGAACAATACGAGGTGTTTTGCGGCTAATCCTACCACTTCGTCGATGACGGATCCTTCGCCCAACTGGAGCAATCGCCCCCCTAAGGAGACTATTCTGCTGGATGGTTGCGATTACGAGCACTGGCTCATTGTCATGGAGCCCCCACAGGGCAATCCTACCAGAGATGAAATCATTGATAGCTATATTAAGACCCTTGCCCAGATTGTCGGAAGTGAGGAGGAAGCCAGGATGAAGATTTATTCAGTCTCTACAAAGCACTACTATGCATTTGGCTGCCTGATATCGGAAGAGTTGTCTTATAAGCTCAAGCCCATGGAGAATGTCCGCTGGGTGCTTCCTGATTCCTACTTGGACCCTCGAACTAAATCATATGGAGGCGAACCTTTCATTAATGGACAGGCGGTTCCCTATGATCCCAAGTACCATGAAGACTGGGTAAGGAACAATGCACGGTGCAATGAAAGACGCTCCAATGATAGACCACGGAACTTTGACCGATCAAGAAATTTTGAAAGGCGCAGAGAAATGCAGCAGCAAGCAAGGCAGAATTACCAGCGCCCT

Fln Alignment:

Contig13994___MILGRALLLRPTLGISSNRGVALFTTRATFQGAFNGRVSTMGFRGGRFLGAVSTFRPKVLVLNNTRCFAANPTTSSMTDPSPNWSNRPPKETILLDGCDYEHWLIVMEPPQGNPTRDEIIDSYIKTLAQIVGSEEEARMKIYSVSTKHYYAFGCLISEELSYKLKPMENVRWVLPDSYLDPRTKSYGGEPFINGQAVPYDPKYHEDWVRNNARCNERRSNDRPRNFDRSRNFXXXXXXXXXXXXNYQRP
D5ADA0________________MILGRALLLRPSLGISSNRGAAFLTTRAALQSAFNGRVSTAGFRGGKFLGAVSIARPPALVLQKTRSFAANPTTSSMTDPSPNWSNRPPKETILLDGCDYEHWLIVLEPPEGSPTRDEIIDSYIKTLSQVVGSEEEARMKIYSVSTKHYFAFGCLISEELSYKLKPMKNVRWVLPDSYLDPRTKSYGGEPFINGQAVPYDPKYHEDWVRNNARCNERRSNDRPRNFDRSRNFERRREMQQQARQNYQRP

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
62		66		33	0.997452
63		33	66		1.0
65	33	33		33	0.997753
66	33		66		0.997452
67	33		33	33	0.997753
68		66	33		0.997452
69	33	33		33	0.997753
70		33	66		1.0
71		33		66	0.997452
72		33		66	1.0
73	66			33	0.997452
74		33	66		1.0
75			33	66	1.0
80	66			33	0.997452
81		33		66	0.997452
82	33			66	0.997452
84			66	33	0.997452
86	33			66	0.997452
447		88		11	0.999952
632		11		88	0.923564
663		12		87	0.992554
664		87	12		0.992554
672		87		12	0.992554
684		12		87	0.992554
693	87		12		0.992554
694			12	87	0.992554
695	12	87			0.992554
696	87	12			0.992554
705		80	20		0.995493
726	20		80		0.995493
735	20	80			0.995493
744		80	20		0.995493
759		80		20	0.995493
780	20		80		0.995493
786		25		75	0.996473
795		75	25		0.996473
831	66		33		0.997452
834		33		66	0.997452
837		33		33	0.997753
840	66		33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain