SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12970

Length: 1070 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene12970

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21068	4/22
SustainPine v2.0	sp_v2.0_unigene21336	2/22
SustainPine v2.0	sp_v2.0_unigene28614	13/22
SustainPine v2.0	sp_v2.0_unigene66032	3/22

Source	Descriptions	Term	Type	Identity
AutoFact	casein kinase [Beta vulgaris]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	casein kinase i isoform delta-like	-	-	83%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Domain of unknown function DUF71, ATP-binding domain	IPR002761	-	-
Sma3	Transcription factor E2F/dimerisation partner (TDP)	IPR003316	-	-
Sma3	YjgF/Yer057p/UK114 family	IPR006175	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Endoribonuclease L-PSP/chorismate mutase-like	IPR013813	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUC1

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 99 aas, putative chimeric sequence, your sequence is shorter than subject: 164 - 481

Fln protein: RRDLGCHSSYPSEFAKYFQYCRQLRFDDKPDYARLSWLFRRVFVCD*FQFDYVFDWTILKYQQTQIAHPPQKALGAVGGTSTGPTAATGPTAGTGQTAKAGAALDRHSGHQGGKDNDGNNFAVDLARKRMPIAVVNSGSLPKFKSPVAHESGTSKDVVRRVRF*

Protein Length: 165

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTACCCATCAGAGTTTGCAAAGTATTTTCAGTATTGCCGCCAATTACGCTTTGATGATAAACCAGATTATGCTCGTCTGAGTTGGCTGTTTCGTCGTGTTTTTGTTTGTGACTGATTTCAATTTGACTATGTTTTTGACTGGACCATTTTGAAATATCAACAAACACAGATTGCTCATCCACCTCAGAAGGCCCTTGGTGCTGTTGGAGGAACGAGCACAGGACCCACAGCAGCCACTGGGCCCACAGCAGGTACCGGCCAGACCGCAAAAGCAGGTGCAGCTTTGGATAGGCATTCAGGTCATCAAGGTGGTAAGGACAATGATGGTAACAACTTTGCTGTTGATCTTGCTCGCAAAAGAATGCCAATAGCTGTTGTGAATTCTGGTAGTTTACCTAAGTTCAAGAGTCCTGTTGCCCATGAATCTGGTACTTCAAAAGACGTGGTAAGAAGAGTCAGATTTTGA___GCATGTTCGGTTGAGATCATTTTGCCCTTTACAATTAATATTCTTGGGTCTGTGTTCTGGTCATATCAATCAGGATTTGAGCATGTTCTGAAACTGAACTCTGATGCAGAAATGATGAAAATTCAAATTCATAGGTATTTTATTGCCCCAATTCCATGGTTCCTCACCAGCTGGGGGCCAGCATCATAATATGGATGATGCCATTTCACCATTTATAAAGGTATTCAGTGCCCTCTGAAACTAATTTACTGTGTAGAAAGTGCATATAGGTCATCTTACATTTGCTGGGGTTTCTGTTCAGTGAGTCCTGTTTAAAGACAAGTGAATTTGGATTTCTGAAGCAGTCCTCATCAGATCTTATTACAAAAAAGTTTACTTTTTGTAATGAGCACTGAATAAAATCAATGAATTTGAGATACAAAGAAATTGCGAGTATTTGGTTTTGTAGATGAGCTTTTGTTTGGCTTTAAATGTTTTCAGTATATGCATTTTTAAAGACGTTTTATAGCAGGTTCAAGATATCTGTTCTTCAGAACTAACTGGCAGATCTTTTGGTACCATGTATTGAAATTCATACA

Fln Alignment:

Contig12970___SYPSEFAKYFQYCRQLRFDDKPDYARLSWLFRRVFVCD*FQFDYVFDWTILKYQQTQIAHPPQKALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDRHSGHQGGKDNDGNNFAVDLARKRMPIAVVNSGSLPKFKSPVAHESGTSKDVV
A9NUC1________________TYPSEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQFDYVLDWTILKYQQTQMANTPPPSI----------------GAAVGSSSRAPPVADKSSGGQDGRDNPWSSAGADSSRRRNTGAIVNAGSLSKHKSPAQNESGAGKDVV

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
121			75	25	0.996473
122		25		75	0.996473
123	25	50	25		0.995533
124	50		50		1.0
126		50	50		1.0
127	50			50	1.0
128		50		50	1.0
129		50		50	1.0
132	50		50		1.0
133			50	50	1.0
134		50		50	1.0
135		50		50	1.0
136	50		50		1.0
138		50	50		1.0
140	50	50			1.0
141			50	50	1.0
142		50	50		1.0
303		20	80		0.995493
308		80		20	0.995493
309	80		20		0.995493
310	20		80		0.995493
312		20		80	0.995493
317	80	20			0.995493
321			80	20	0.995493
324		20		80	0.995493
464		60	40		1.0
465	80			20	0.995493
467	80	20			0.995493
468	60			40	1.0
469	60	20		20	0.99255
471	80		20		0.995493
473		20	60		0.99255
475			60	20	0.99255
477			20	80	0.995493
478	60	40			1.0
479	80			20	0.995493
480		20	80		0.995493
481	50			25	0.995533
482	50	25		25	0.995533
483	25	25	50		0.995533
485		25	75		0.996473
542			70	10	0.999998
543		23	76		1.0
551	23	7		69	1.0
552		23		76	1.0
555		7		23	1.0
562	76		23		1.0
566	76	23			1.0
678		46	53		1.0
917		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain