SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12456

Length: 747 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene12456

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17435	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoglyceromutase [Chlamydophila abortus S26/3] sp\|Q5L4Y3.1\|GPMA_CHLAB RecName: Full=2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Short=BPG-dependent PGAM; Short=PGAM; Short=Phosphoglyceromutase; Short=dPGM emb\|CAH64312.1\| putative phosph	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	phosphoglycerate mutase	-	-	63%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoglucomutase.	EC:5.4.2.2	-	0.0	63%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	63%
Blast2go	Pentose phosphate pathway	00030	63%
Blast2go	Galactose metabolism	00052	63%
Blast2go	Purine metabolism	00230	63%
Blast2go	Starch and sucrose metabolism	00500	63%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	63%
Blast2go	Metabolic pathways	01100	63%
Blast2go	Biosynthesis of secondary metabolites	01110	63%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	63%
Blast2go	starch biosynthetic process	GO:0019252	Biological Process	63%
Blast2go	response to nitrate	GO:0010167	Biological Process	63%
Blast2go	detection of gravity	GO:0009590	Biological Process	63%
Blast2go	phosphoglucomutase activity	GO:0004614	Molecular Function	63%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	63%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	63%
Blast2go	stromule	GO:0010319	Cellular Component	63%
Blast2go	apoplast	GO:0048046	Cellular Component	63%

Source	InterPros	Term	Type	Identity
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	Phosphoglycerate mutase 1	IPR005952	-	-

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
157		20		80	0.995493
172	83		16		0.994512
174		16	83		0.994512
180	83	16			0.994512
184	83			16	0.994512
243			25	75	1.0
246			25	75	1.0
249			25	75	1.0
252	75	25			1.0
253	75			25	1.0
257	75			25	1.0
258	25		75		1.0
355	88			11	0.923564
356	88	11			0.923564
357	88		11		0.923564
360	11		88		0.923564
363		88		11	0.923564
368	88			11	0.923564
369			11	88	0.923564
373	11			88	0.923564
377		11		88	0.923564
378	11	88			0.923564
417	50		50		1.0
423	87		12		0.992554
425			87	12	0.992554
427	87		12		0.992554
497		20		80	0.995493
506			80	20	0.995493
510	80	20			0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain