SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10986

Length: 2088 nt

UniGene Fasta

>uagpf_v2_unigene10986
CGTCGTGACCTTGGCTGTCACTCATTCTATCCCTTTTGTTCCATTCTGCGCGAACAGGAGAATGGCAATTTAAATTTCGTTTCAGATTCTACTTGAATCTCAAATCTCTGTGCATCCGAATCCATCGAGCGGACGAATCCAACCCTAATTAACCTACAACGAAATTTCATTGCGGCCATTAGTTTTTTTCTCGTTGAGCAGCCATGATCACGGGCAGTAAGATCAAGTCTCTGGACTTTTACAGGAAGATTCCTCGAGATTTAACGGAGGCAACTTTATCAGGGGCAGGGTTATCAATATTTGCAGCACTGTCAATGATATTTCTCTTTGGGATGGAATTGAACAATTACTTGACAGTTAACACTACAACAAATGTTGTTGTTGATAGAAGCCAGGATGGTGATCATTTGCGCATTGACTTTAATATCAGTTTTCTTGCTTTGTCATGTGAGTTTGCTTCAGTTGACGTGAGTGATGTGTTAGGCACGAATAGACTGAATATAACAAAAACAGTGCGCAAGTTTCCTATAAGTCCTGATATGAAGTTAGCTGGTCCCGAATTCCACCCAGGACCTATTCCAGGTCTTTCAAACCATGGAGAGCATGAGAATGAAAGTGACGAGGAGCTTGGTGGAGGAGCTGTCAATATGAATGCTAAGAACTTTGATAAATATGCCCATGAGTATACGATTTTGGTGGTCAATTTTTTTGCCCCTTGGTGTGCCTGGAGCAATCGTCTGAAACCCTCGTGGGAGAAGGCAGCTAACATTATGAGAGAGAGATATCATCCCGAGCTTGATAAAAGAATCCTGTTGGGCAAGGTGGACTGCACTCAAGAACCTGATTTATGTAGACGGCATCACATTCAAGGGTACCCATCTATTAGGATCTTTCGTAAGGGAAATGATGTAAGGGAAAGTCATGGACACCACGAACATGAATCTTATTATGGAGACAGAGACTCTGATTCATTGGTTACGGCAATGGAGACATTGGTTACAACCATTCCCTCTGAGACACATCTGGCATTGGAAGATAAATCAGGTACTGCAAATGCAACCAAGCGGCCTGCACCAAAGACAGGGGCTTGCAGAATAGAGGGATTTGTACGAGTAAAGAAGGTGCCTGGAAACCTTATAATATCTGCTCACTCTGGATCACATTCATTTGATGCTACAACAATGAATATGTCCCACGTGATCTCTTATTTTACTTTTGGAAAAAGACTTTCCTGGCAAATGGTGAAGGAAATGAAGCGTTTAACACCTTATCTCGGTGCGGGTACAGATCGCTTGACTGGGAAGCCCTACATTACAGATCATGAAAATGTTACGATTGATCACTATATTCAAGTTGTTAAGACCGAGGTGGCGTCAAGTAAAGGTAGCGGAAGTGAAATTTTACTTGAACAGTATGATTACACTGCACATAGTAGTATGATGCAAACTGCAGATGTTCCTGTTGCAAAATTTCATTTTGAACTCTCCCCCTTGCAGGTCTTGATGACAGAGAATTCCAAGTCATTTTCACACTTCATTACCAATGTTTGCGCTATCATTGGTGGTGTTTTCACGGTTGCAGGTATTATTGATTCCATGTTCCATAATACAATGCAAATGTTAAAAAAATAGAGCTCGGTAAACAAATATAGTTTAAGCGAACAATGGATATTAACATGAATACTATCTTGTTCTTTGGTTTCTCATTGAAACCTGTTGACCATTATTTGAGCAGACACGGAGTAGTTTATGGGTATCCTTTATTCATTGTATGGATTGTGTAAGTTGGATTCCGTCCTTGCTTTTAGCAACTGATCTGCTCTGGATATTTCGAATAGATGTTTTCCATGTTCCAAAATTCCCCAGTTATTGGGTTCTACATTTAGCTTGTTGGAGAAGTCCAGATATATAGTCTTGTACAAGCAAAAAAGTCCCTTTTTTGGGGTCAGAAGTTTTGTAAAATTGCTACACTACAAGTATGGAAGCAGCTATTTTGGCACAAGATGGATTGCAACTTACCATTCTTAGCTAATAACATTGATTCAACTTCAAGAGATGAGTTATCTTTTGAGAGACAATGACAGTAGTG

Ace file of the UniGene uagpf_v2_unigene10986

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8253	55/56

Source	Descriptions	Term	Type	Identity
AutoFact	protein disulfide isomerase12 [Zea mays] gb\|AAX09970.1\| protein disulfide isomerase [Zea mays]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	protein disulfide-isomerase 5-4-like	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein disulfide-isomerase.	EC:5.3.4.1	-	0.0	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	0.0	81%
Blast2go	protein disulfide isomerase activity	GO:0003756	Molecular Function	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3		IPR012335	-	-
Sma3	Domain of unknown function DUF1692	IPR012936	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR017936	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSV6

Fln msg: your sequence is longer than subject: 476 - 279

Fln protein: MITGSKIKSLDFYRKIPRDLTEATLSGAGLSIFAALSMIFLFGMELNNYLTVNTTTNVVVDRSQDGDHLRIDFNISFLALSCEFASVDVSDVLGTNRLNITKTVRKFPISPDMKLAGPEFHPGPIPGLSNHGEHENESDEELGGGAVNMNAKNFDKYAHEYTILVVNFFAPWCAWSNRLKPSWEKAANIMRERYHPELDKRILLGKVDCTQEPDLCRRHHIQGYPSIRIFRKGNDVRESHGHHEHESYYGDRDSDSLVTAMETLVTTIPSETHLALEDKSGTANATKRPAPKTGACRIEGFVRVKKVPGNLIISAHSGSHSFDATTMNMSHVISYFTFGKRLSWQMVKEMKRLTPYLGAGTDRLTGKPYITDHENVTIDHYIQVVKTEVASSKGSGSEILLEQYDYTAHSSMMQTADVPVAKFHFELSPLQVLMTENSKSFSHFITNVCAIIGGVFTVAGIIDSMFHNTMQMLKK*

Protein Length: 477

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTATCCCTTTTGTTCCATTCTGCGCGAACAGGAGAATGGCAATTTAAATTTCGTTTCAGATTCTACTTGAATCTCAAATCTCTGTGCATCCGAATCCATCGAGCGGACGAATCCAACCCTAATTAACCTACAACGAAATTTCATTGCGGCCATTAGTTTTTTTCTCGTTGAGCAGCC_-_ATGATCACGGGCAGTAAGATCAAGTCTCTGGACTTTTACAGGAAGATTCCTCGAGATTTAACGGAGGCAACTTTATCAGGGGCAGGGTTATCAATATTTGCAGCACTGTCAATGATATTTCTCTTTGGGATGGAATTGAACAATTACTTGACAGTTAACACTACAACAAATGTTGTTGTTGATAGAAGCCAGGATGGTGATCATTTGCGCATTGACTTTAATATCAGTTTTCTTGCTTTGTCATGTGAGTTTGCTTCAGTTGACGTGAGTGATGTGTTAGGCACGAATAGACTGAATATAACAAAAACAGTGCGCAAGTTTCCTATAAGTCCTGATATGAAGTTAGCTGGTCCCGAATTCCACCCAGGACCTATTCCAGGTCTTTCAAACCATGGAGAGCATGAGAATGAAAGTGACGAGGAGCTTGGTGGAGGAGCTGTCAATATGAATGCTAAGAACTTTGATAAATATGCCCATGAGTATACGATTTTGGTGGTCAATTTTTTTGCCCCTTGGTGTGCCTGGAGCAATCGTCTGAAACCCTCGTGGGAGAAGGCAGCTAACATTATGAGAGAGAGATATCATCCCGAGCTTGATAAAAGAATCCTGTTGGGCAAGGTGGACTGCACTCAAGAACCTGATTTATGTAGACGGCATCACATTCAAGGGTACCCATCTATTAGGATCTTTCGTAAGGGAAATGATGTAAGGGAAAGTCATGGACACCACGAACATGAATCTTATTATGGAGACAGAGACTCTGATTCATTGGTTACGGCAATGGAGACATTGGTTACAACCATTCCCTCTGAGACACATCTGGCATTGGAAGATAAATCAGGTACTGCAAATGCAACCAAGCGGCCTGCACCAAAGACAGGGGCTTGCAGAATAGAGGGATTTGTACGAGTAAAGAAGGTGCCTGGAAACCTTATAATATCTGCTCACTCTGGATCACATTCATTTGATGCTACAACAATGAATATGTCCCACGTGATCTCTTATTTTACTTTTGGAAAAAGACTTTCCTGGCAAATGGTGAAGGAAATGAAGCGTTTAACACCTTATCTCGGTGCGGGTACAGATCGCTTGACTGGGAAGCCCTACATTACAGATCATGAAAATGTTACGATTGATCACTATATTCAAGTTGTTAAGACCGAGGTGGCGTCAAGTAAAGGTAGCGGAAGTGAAATTTTACTTGAACAGTATGATTACACTGCACATAGTAGTATGATGCAAACTGCAGATGTTCCTGTTGCAAAATTTCATTTTGAACTCTCCCCCTTGCAGGTCTTGATGACAGAGAATTCCAAGTCATTTTCACACTTCATTACCAATGTTTGCGCTATCATTGGTGGTGTTTTCACGGTTGCAGGTATTATTGATTCCATGTTCCATAATACAATGCAAATGTTAAAAAAATAG___AGCTCGGTAAACAAATATAGTTTAAGCGAACAATGGATATTAACATGAATACTATCTTGTTCTTTGGTTTCTCATTGAAACCTGTTGACCATTATTTGAGCAGACACGGAGTAGTTTATGGGTATCCTTTATTCATTGTATGGATTGTGTAAGTTGGATTCCGTCCTTGCTTTTAGCAACTGATCTGCTCTGGATATTTCGAATAGATGTTTTCCATGTTCCAAAATTCCCCAGTTATTGGGTTCTACATTTAGCTTGTTGGAGAAGTCCAGATATATAGTCTTGTACAAGCAAAAAAGTCCCTTTTTTGGGGTCAGAAGTTTTGTAAAATTGCTACACTACAAGTATGGAAGCAGCTATTTTGGCACAAGATGGATTGCAACTTACCATTCTTAGCTAATAACATTGATTCAACTTCAAGAGATGAGTTATCTTTTGAGAGACAATGACAGTAGTG

Fln Alignment:

Contig10986___NHGEHENESDEELGGGAVNMNAKNFDKYAHEYTILVVNFFAPWCAWSNRLKPSWEKAANIMRERYHPELDKRILLGKVDCTQEPD--LCRRHHIQGYPSIRIFRKG
A9NSV6________________SEAEAEAETEAEGGEAVLTLDANNFAEALSSHPFIVVEFYAPWCGHCKRLAPEYEKAAASLKNH-----DPPIVLAKVDANEETNKALASEYDVKGFPTLKIIRKG

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
631			16	83	0.994512
633		16	83		0.994512
637		16	83		0.994512
638	83	16			0.994512
639			83	16	0.994512
640			83	16	0.994512
641	83		16		0.994512
1383	83			16	0.994512
1384		16	83		0.994512
1385	20			80	0.995493
1456		20	80		0.995493
1457		80	20		0.995493
1458	80			20	0.995493
1461		20		80	0.995493
1462		20	80		0.995493
1466		80	20		0.995493
1471		20		80	0.995493
1472	20		80		0.995493
1475	80			20	0.995493
1476	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain