SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10402

Length: 417 nt

UniGene Fasta

>uagpf_v2_unigene10402
CGTCGTGACCTTGGCTGTCACTCATTTTGTCTTTGGTTTTTGCAATTTCGGACTGGTATATACATGCATGCGAGAGATTGGAAGAATGGGCTGCAAATCAGGACCAAACTCTGAGCAGATTGTCTGCCCTCAGGTTTCAGGTTCTACCCTACGGACGAGGAGTTGATGGTGCACTACTTGTGTAAAAGAGTGGCTTCACAGCCCTTTCCAATTCCTATTATTGCAGAGATTGATTTGTACAAGTTTGATCCATGGCAGCTACCCGAGAAGGCATTATTTGGGGAGAAAGAATGGTACTTCTTCAGTCCACGAGACAGAAAATACCCAAATGGATCCCGTCCCAACCGAGCTGCAGGATCTGGGTATTGGAAAGCTACTGGGACAGACAAACCTGTTACAGCTGGAGCTAACAAGATT

Ace file of the UniGene uagpf_v2_unigene10402

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8081	4/5

Source	Descriptions	Term	Type	Identity
AutoFact	pfam02365, NAM, No apical meristem (NAM) protein	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	nac protein 1	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	0.0	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVZ2

Fln msg: Distance to subject end: 69 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 101 - 186

Fln protein: ADCLPSGFRFYPTDEELMVHYLCKRVASQPFPIPIIAEIDLYKFDPWQLPEKALFGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGTDKPVTAGANKI

Protein Length: 102

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTGTCTTTGGTTTTTGCAATTTCGGACTGGTATATACATGCATGCGAGAGATTGGAAGAATGGGCTGCAAATCAGGACCAAACTCTGAGCAGATTGTCTGCCCTCAGGTTTCAGGTTCTACCCTACGGACGAGGAGTTGATGGTGCACTACTTGTGTAAAAGAGTGGCTTCACAGCCCTTTCCAATTCCTATTATTGCAGAGATTGATTTGTACAAGTTTGATCCATGGCAGCTACCCGAGAAGGCATTATTTGGGGAGAAAGAATGGTACTTCTTCAGTCCACGAGACAGAAAATACCCAAATGGATCCCGTCCCAACCGAGCTGCAGGATCTGGGTATTGGAAAGCTACTGGGACAGACAAACCTGTTACAGCTGGAGCTAACAAGATT

Fln Alignment:

Contig10402___LPSGFRFYPTDEELMVHYLCKRVASQPFPIPIIAEIDLYKFDPWQLPEKALFGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGTDKPVTAGANKI
A9NVZ2________________LPPGFRFYPTDEELMVHYLCKRVASQPFPIPIIAEIDLYKFDPWQLPEKALFGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGTDKPVTAGLNRM

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
116	66			33	0.997452
120		33	66		0.997452
121	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain