SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene9451

Length: 266 nt

UniGene Fasta

>uagpf_v2_unigene9451
CGTCGTGACCTTGGCTGTCACTCATGATGACGGCCTTACCTATCTCAGTAAATCTTTGCAGAGGCTTGATGTTTCAAAGTGTCGGAATGTCAGCTGCACAGGAATAATTTCCCTTGCAAGTGTTTCCTCACACTTGTGCCAGCTCACTCTTGCCTATTGCATACCAGTTACAAATGCACTTCTTGCCAGCTTTCAACATTTTGACAGACTGCAAACAATCAAATTTGATGGCTGTATGATTTCTAGCACTGCACTTGAGTCTATTG

Ace file of the UniGene uagpf_v2_unigene9451

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10296	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	F-box/LRR-repeat protein 3 [Arabidopsis thaliana] sp\|Q8RWU5.1\|FBL3_ARATH RecName: Full=F-box/LRR-repeat protein 3 gb\|AAM14053.1\| putative F-box protein family, AtFBL3 [Arabidopsis thaliana] gb\|AAM67471.1\| putative F-box family protein AtFBL3 [Arabidopsis	-	-	48%
FL-Next	sp=F-box/LRR-repeat protein 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	35%
Blast2go	f-box lrr-repeat protein 3-like	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	71%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	71%
Blast2go	plastid	GO:0009536	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease A	IPR001427	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Leucine-rich repeat, cysteine-containing subtype	IPR006553	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8RWU5

Fln msg: Distance to subject end: 341 aas, your sequence is shorter than subject: 88 - 665

Fln protein: VVTLAVTHDDGLTYLSKSLQRLDVSKCRNVSCTGIISLASVSSHLCQLTLAYCIPVTNALLASFQHFDRLQTIKFDGCMISSTALESI

Protein Length: 89

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGATGACGGCCTTACCTATCTCAGTAAATCTTTGCAGAGGCTTGATGTTTCAAAGTGTCGGAATGTCAGCTGCACAGGAATAATTTCCCTTGCAAGTGTTTCCTCACACTTGTGCCAGCTCACTCTTGCCTATTGCATACCAGTTACAAATGCACTTCTTGCCAGCTTTCAACATTTTGACAGACTGCAAACAATCAAATTTGATGGCTGTATGATTTCTAGCACTGCACTTGAGTCTATTG

Fln Alignment:

Contig9451___DDGLTYLS---KSLQRLDVSKCRNVSCTGIISLASVSSHLCQLTLAYCIPVTNA-LLASFQHFDRLQTIKFDGCMISSTALESI
Q8RWU5_______________DDSLKSLRHDCKSLKKLDASSCQNLTHRGLTSLLSGAGYLQRLDLSHCSSVISLDFASSLKKVSALQSIRLDGCSVTPDGLKAI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
217	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain