SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene9376

Length: 592 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene9376

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1837	8/9

Source	Descriptions	Term	Type	Identity
AutoFact	formyltetrahydrofolate deformylase, putative [Brassica oleracea]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	formyltetrahydrofolate deformylase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:3.5.1.1-	-	0.0	83%
Blast2go	Transferases, Transferring one-carbon groups, Hydroxymethyl-, formyl- and related transferases.	EC:2.1.2.-	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	83%
Blast2go	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	83%
Blast2go	Tetracycline biosynthesis	00253	83%
Blast2go	Histidine metabolism	00340	83%
Blast2go	Tyrosine metabolism	00350	83%
Blast2go	Phenylalanine metabolism	00360	83%
Blast2go	Tryptophan metabolism	00380	83%
Blast2go	Benzoxazinoid biosynthesis	00402	83%
Blast2go	Selenocompound metabolism	00450	83%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	83%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	83%
Blast2go	Methane metabolism	00680	83%
Blast2go	Porphyrin and chlorophyll metabolism	00860	83%
Blast2go	Carotenoid biosynthesis	00906	83%
Blast2go	Phenylpropanoid biosynthesis	00940	83%
Blast2go	Flavonoid biosynthesis	00941	83%
Blast2go	Anthocyanin biosynthesis	00942	83%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	83%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	83%
Blast2go	Insect hormone biosynthesis	00981	83%
Blast2go	Biosynthesis of type II polyketide products	01057	83%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	83%
Blast2go	Metabolic pathways	01100	83%
Blast2go	Biosynthesis of secondary metabolites	01110	83%

Source	GOs	Term	Type	Identity
Blast2go	tetrahydrofolate metabolic process	GO:0046653	Biological Process	83%
Blast2go	methylation	GO:0032259	Biological Process	83%
Blast2go	photorespiration	GO:0009853	Biological Process	83%
Blast2go	'de novo' IMP biosynthetic process	GO:0006189	Biological Process	83%
Blast2go	formyltetrahydrofolate deformylase activity	GO:0008864	Molecular Function	83%
Blast2go	hydroxymethyl-, formyl- and related transferase activity	GO:0016742	Molecular Function	83%
Blast2go	methyltransferase activity	GO:0008168	Molecular Function	83%
Blast2go	mitochondrion	GO:0005739	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Phosphoribosylglycinamide formyltransferase, active site	IPR001555	-	-
Sma3	Formyl transferase, N-terminal	IPR002376	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Formyltetrahydrofolate deformylase	IPR004810	-	-

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
231	75	25			0.996473
232	75		25		0.996473
235	75		25		0.996473
237			25	75	0.996473
240		25		75	0.996473
241			75	25	0.996473
245	75		25		0.996473
251		20	80		0.995493
253	20		80		0.995493
279	85	14			0.993533
280	85		14		0.993533
286		14		85	0.993533
290	85		14		0.993533
291		14		85	0.993533
294	75	12	12		0.975346
295			12	87	0.992554
296		75		12	0.975346
298	87		12		0.992554
299	75	12		12	0.975346
300			87	12	0.992554
301	12	87			0.992554
302	75	12		12	0.975346
303		12		87	0.992554
306	87		12		0.992554
307	87		12		0.992554
309			87	12	0.992554
310			12	87	0.992554
312		12		87	0.992554
313	12		87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain