SustainPineDB

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Assembly info
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SNPs
SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene9190

Length: 423 nt

UniGene Fasta

>uagpf_v2_unigene9190
CATCATCCGGATGACAACGTCGTGACCTTGGCTGTCACTCATCGTTCCTCTTTCAAGGCATTCCTTGAAGTGGTCAAAAGAAGAAGCTTACCATGGGACAATGTGGAAATTGATGCAATTCACTCGCTACAGCTTATTCTACGAGGCTCGTTTCAGGATATTGATGACAGTGGTACTAAAACTATGGTTCATTCTCGGCTAAATGATTTGCGATTGCAGGGCATAGACGAACTTAGCTCCGTGGCTAGTGAGATGGTGCGTTTGATTGAAACAGCTACAGCACCTATTTTGGCTGTAGATTATAATGGACTTGTAAATGGATGGAATGCAAAAGTGGCAGAATTGACGGGCCTCCCGGTTGGAGAAGCCATGGGCATGTCCCTTGTTCAGGATCTTGTTTTTGAGGAGTCTGTGGAGAGGGTT

Ace file of the UniGene uagpf_v2_unigene9190

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8312	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Phytochrome n=1 Tax=Marchantia paleacea var. diptera RepID=Q9AVP3_MARPA	-	-	73%
FL-Next	sp=Phytochrome; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	phytochrome	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	red, far-red light phototransduction	GO:0009585	Biological Process	86%
Blast2go	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	86%
Blast2go	protein-tetrapyrrole linkage	GO:0017006	Biological Process	86%
Blast2go	peptidyl-histidine phosphorylation	GO:0018106	Biological Process	86%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	86%
Blast2go	protein-chromophore linkage	GO:0018298	Biological Process	86%
Blast2go	detection of visible light	GO:0009584	Biological Process	86%
Blast2go	ATP binding	GO:0005524	Molecular Function	86%
Blast2go	G-protein coupled photoreceptor activity	GO:0008020	Molecular Function	86%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	86%
Blast2go	two-component sensor activity	GO:0000155	Molecular Function	86%
Blast2go	membrane	GO:0016020	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	PAS-associated, C-terminal	IPR000700	-	-
Sma3	Phytochrome	IPR001294	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	GAF domain	IPR003018	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	IPR003661	-	-
Sma3	Signal transduction histidine kinase, core	IPR005467	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Phytochrome A/B/C/D/E	IPR012129	-	-
Sma3	Phytochrome, central region	IPR013515	-	-
Sma3	Phytochrome chromophore binding site	IPR013516	-	-
Sma3	PAS fold-2	IPR013654	-	-
Sma3	PAS fold	IPR013767	-	-
Sma3	Phytochrome chromophore attachment domain	IPR016132	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Flagellar basal body rod protein, conserved site	IPR019776	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PS46

Fln msg: Distance to subject end: 450 aas, your sequence is shorter than subject: 141 - 1132

Fln protein: HHPDDNVVTLAVTHRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFQDIDDSGTKTMVHSRLNDLRLQGIDELSSVASEMVRLIETATAPILAVDYNGLVNGWNAKVAELTGLPVGEAMGMSLVQDLVFEESVERV

Protein Length: 142

Fln nts: CATCATCCGGATGACAACGTCGTGACCTTGGCTGTCACTCATCGTTCCTCTTTCAAGGCATTCCTTGAAGTGGTCAAAAGAAGAAGCTTACCATGGGACAATGTGGAAATTGATGCAATTCACTCGCTACAGCTTATTCTACGAGGCTCGTTTCAGGATATTGATGACAGTGGTACTAAAACTATGGTTCATTCTCGGCTAAATGATTTGCGATTGCAGGGCATAGACGAACTTAGCTCCGTGGCTAGTGAGATGGTGCGTTTGATTGAAACAGCTACAGCACCTATTTTGGCTGTAGATTATAATGGACTTGTAAATGGATGGAATGCAAAAGTGGCAGAATTGACGGGCCTCCCGGTTGGAGAAGCCATGGGCATGTCCCTTGTTCAGGATCTTGTTTTTGAGGAGTCTGTGGAGAGGGTT

Fln Alignment:

Contig9190___HHPDDNVVTLAVTHRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFQDIDDSGTKTMVHSRLNDLRLQGIDELSSVASEMVRLIETATAPILAVDYNGLVNGWNAKVAELTGLPVGEAMGMSLVQDLVFEESVERV
C0PS46_______________HHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFQDIDDSGTKTMVHSRLNDLRLQGIDELSSVASEMVRLIETATAPILAVDYNGLVNVWNAKVAELTGLPVGEAMGMSLVQDLVFEESVERV

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
18		75	25		0.996473
20	25			75	0.996473
27	80			20	0.995493
29		80	20		0.995493
30	20			80	0.995493
31		20		80	0.995493
34	20	80			0.995493
43	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain