SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene8742

Length: 394 nt

UniGene Fasta

>uagpf_v2_unigene8742
CGTCGTGACCTTGGCTGTCACTCAACCCAGGGCTTCTGAAAATTCGGTAGAAGATATACAGTCTGCCGCTGCTGCCACAATTTCCTTTGCAGTGCAATTCAGAGCACCTGTAAGTGTGGGCGATCTCAATGTATGTGCCAGAGTGTGGCAGAAAAACAGTGTGTTGACTCTAGATGATGCATTGGGTAGATTGAAGGATTCAAAGTCCTTATTCATGGCTTCCCATGTGGTTGGTTATCCCCGAATTGCCCCCAAGAGAGAACTCAAGTTTGCACTTGAATCCTTTTGGGATGGCAAGAGCAGTGCAGCTGAGTTGCAGAATGTAGCAAAGAATTTGAGAGCTGCAACATGGAAGCAAATGGCTGATGCCGGTCTAACATACATCCCAAGCAAC

Ace file of the UniGene uagpf_v2_unigene8742

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6571	2/6
SustainPine v2.0	sp_v2.0_unigene24872	4/6

Source	Descriptions	Term	Type	Identity
AutoFact	Vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine n=2 Tax=Populus trichocarpa RepID=B9I615_POPTR	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	5-methyltetrahydropteroyltriglutamate-homocysteine expressed	-	-	90%

Source	InterPros	Term	Type	Identity
Sma3	Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal	IPR013215	-	-
Sma3	Methionine synthase, vitamin-B12 independent	IPR002629	-	-
Sma3	Cobalamin-independent methionine synthase	IPR006276	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKF4

Fln msg: Distance to subject end: 706 aas, your sequence is shorter than subject: 60 - 766

Fln protein: MASHVVGYPRIAPKRELKFALESFWDGKSSAAELQNVAKNLRAATWKQMADAGLTYIPSN

Protein Length: 61

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACCCAGGGCTTCTGAAAATTCGGTAGAAGATATACAGTCTGCCGCTGCTGCCACAATTTCCTTTGCAGTGCAATTCAGAGCACCTGTAAGTGTGGGCGATCTCAATGTATGTGCCAGAGTGTGGCAGAAAAACAGTGTGTTGACTCTAGATGATGCATTGGGTAGATTGAAGGATTCAAAGTCCTTATTC_-_ATGGCTTCCCATGTGGTTGGTTATCCCCGAATTGCCCCCAAGAGAGAACTCAAGTTTGCACTTGAATCCTTTTGGGATGGCAAGAGCAGTGCAGCTGAGTTGCAGAATGTAGCAAAGAATTTGAGAGCTGCAACATGGAAGCAAATGGCTGATGCCGGTCTAACATACATCCCAAGCAAC

Fln Alignment:

Contig8742___MASHVVGYPRIAPKRELKFALESFWDGKSSAAELQNVAKNLRAATWKQMADAGLTYIPSN
B8LKF4_______________MASHVVGYPRIAPKRELKFALESFWDGKSSAAELQNVAKDLRVATWKQMADAGLTYIPSN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
29	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain