SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene8312

Length: 1535 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene8312

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6641	12/34
SustainPine v2.0	sp_v2.0_unigene18282	9/34
SustainPine v2.0	sp_v2.0_unigene77151	6/34
SustainPine v2.0	sp_v2.0_unigene80150	5/34

Source	Descriptions	Term	Type	Identity
AutoFact	phytol kinase 1 [Arabidopsis thaliana] sp\|Q9LZ76.1\|PHYK1_ARATH RecName: Full=Phytol kinase 1, chloroplastic; AltName: Full=Vitamin E pathway gene 5 protein; Flags: Precursor emb\|CAB85555.1\| putative protein [Arabidopsis thaliana] gb\|AAX22258.1\| At5g04490	-	-	49%
FL-Next	sp=Phytol kinase 1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	58%
Blast2go	phytol kinase	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphatidate cytidylyltransferase.	EC:2.7.7.41	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	Glycerophospholipid metabolism	00564	77%
Blast2go	Metabolic pathways	01100	77%
Blast2go	Phosphatidylinositol signaling system	04070	77%

Source	GOs	Term	Type	Identity
Blast2go	vitamin E biosynthetic process	GO:0010189	Biological Process	77%
Blast2go	phospholipid biosynthetic process	GO:0008654	Biological Process	77%
Blast2go	phosphatidate cytidylyltransferase activity	GO:0004605	Molecular Function	77%
Blast2go	phytol kinase activity	GO:0010276	Molecular Function	77%
Blast2go	chloroplast	GO:0009507	Cellular Component	77%
Blast2go	membrane	GO:0016020	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphatidate cytidylyltransferase	IPR000374	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LZ76

Fln msg: Separated hits, possible frame ERROR between 898 and 952, your sequence is longer than subject: 355 - 304

Fln protein: MNLSVKPHVSPLSSWRIEFQPSPCPHARKKLAFAGTTALLLVKQTNTWIPSYKNSTFFLTGNPVSNAGHLCYRPACEGKHLSLAFTCYNNGPSFVKLSTAATESGLGSTATAMDMGCTALVMVGAYGLVSAFDVLTKWNILDQKLSRKFVHILSGILFMMSWPLFSASEDARYIAAIVPLANFLRLLIYGLKLATNEALVNAVSRKGSPEELLRGPMYYVMALIFCTIFFWRETPIGMVSLAMMCGGDGIADIIGRRFGQYKLPYNNEKSWxxxxxxxxxxxxxxxxxxxYYFSLFGFIDLDWETTARNVAIISMAATVVESLPVTLTRFLDDNISVPSTCILVGLCLFPMQSS*

Protein Length: 356

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGTGTGGAAGGTAAGGTGGGCATTGTCTTGACCTTTGTTCTTCTGGATTTGCAGTA_-_ATGAACCTGAGTGTAAAGCCACACGTTTCCCCTTTATCTTCTTGGAGAATCGAGTTTCAACCATCCCCGTGCCCACACGCCAGGAAGAAACTGGCGTTTGCGGGAACTACAGCTTTGCTTCTTGTCAAGCAGACCAATACTTGGATCCCGAGCTATAAAAACTCGACTTTCTTTTTAACAGGGAACCCTGTTTCCAATGCTGGGCACCTCTGCTATAGACCTGCATGTGAAGGAAAACACTTGAGTTTAGCATTCACGTGCTATAACAATGGGCCCAGTTTTGTAAAGTTATCAACTGCAGCTACAGAATCTGGCCTTGGGTCGACTGCTACGGCAATGGACATGGGCTGTACAGCCCTGGTCATGGTGGGAGCTTATGGTTTAGTATCTGCCTTCGATGTCCTCACCAAGTGGAATATATTGGATCAGAAATTGAGCCGGAAGTTTGTGCACATCTTATCAGGAATATTATTCATGATGTCCTGGCCTCTTTTCAGTGCTTCTGAAGATGCCCGTTATATTGCTGCAATTGTGCCTCTAGCAAATTTTTTAAGGCTTCTGATTTACGGACTCAAATTAGCAACAAATGAAGCGTTAGTCAATGCTGTGAGCAGAAAGGGCAGCCCTGAGGAATTATTAAGAGGACCTATGTATTACGTGATGGCTCTAATTTTCTGCACCATTTTTTTTTGGCGAGAGACCCCTATAGGAATGGTTTCTTTGGCAATGATGTGTGGCGGGGATGGTATAGCTGATATTATAGGAAGAAGATTTGGACAATATAAGCTTCCTTATAACAACGAGAAAAGCTGGGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTACTATTTCTCTTTATTTGGATTCATTGATCTAGATTGGGAGACTACAGCTCGAAATGTTGCAATAATATCAATGGCTGCAACCGTTGTTGAATCCCTTCCGGTAACATTAACAAGGTTTTTGGATGACAACATTTCAGTTCCTTCAACATGCATACTGGTTGGGCTCTGCCTTTTTCCAATGCAAAGTTCATAA___GGAACCAGTTTGAAGATATTATAGTTGAAGAAATATTCGTGCAAAGTTCATACGGAACCAGTTTGAAGATATTATAGTTGGAAGTAGCATGAAGAATGCACTTTGAACGATGCTCAAAATGCGGGTTTACTGTACAAATTCTGTGCCATGTCATAAAGAACATGACAGTTCTATTCAATCGGAGCCAAAATACCAAGTTTTTCGGTGGGAGAACTGTAATGAAACCTCCAATATGATCAATAGAATCGAGAACAATAAAGATTTTATTACATAGTGGAACCTTCTATATTTATAAAAGCTATAACATTAACATGTTAATGTTTAGTGTGGTAGTGTGATTACATTAACATGTTAATGTTTAGCGTGGTAGTGTGATTACACTAGATTCA

Fln Alignment:

Contig8312___SGLGSTATAMDMGCTALVMVGAYGLVSAFDVLTKWNILDQKLSRKFVHILSGILFMMSWPLFSASEDARYIAAIVPLANFLRLLIYGLKLATNEALVNAVSRKGSPEELLRGPMYYVMALIFCTIFFWRETPIGMVSLAMMCXXXXXXXXXXXXXXQYKLPYNNEKSWAxxxxxxxxxxxxxxxxxxYYFSLFGFIDLDWETTARNVAIISMAATVVESLPVTLTRFLDDNISVPSTCILVGLCLF
Q9LZ76_______________SAVATNSLLHDVGATVAVLGGAYALVLSFESLTKRNVIQQSLSRKLVHILSGLLFVLAWPIFSGSTEARYFAAFVPLVNGLRLVINGLSISPNSMLIKSVTREGRAEELLKGPLFYVLALLFSAVFFWRESPIGMISLAMMCGGDGIADIMGRKFGSTKIPYNPRKSWAxxxxxxxxxxxxxxxxxxYYYSSLGYLHMNWETTLQRVAMVSMVATVVESLPI--TDQLDDNISVPLATILAAYLSF

SNPs (tot: 76)

Position	A %	C %	G %	T %	Probability
50		50		50	1.0
52	50			50	1.0
53	50	50			1.0
54			50	50	1.0
56		50	50		1.0
58	50	50			1.0
63			50	50	1.0
71		50		50	1.0
72			50	50	1.0
74	50			50	1.0
383		28		71	1.0
385		71		28	1.0
386	71	28			1.0
388		71		28	1.0
389			28	71	1.0
392	71	28			1.0
393			71	28	1.0
394	71			28	1.0
395	71		28		1.0
396			28	71	1.0
400			71	28	1.0
406	28			71	1.0
524	83	16			0.994512
526		83		16	0.994512
531	83	16			0.994512
532		16	83		0.994512
535			16	83	0.994512
547	83	16			0.994512
548			16	83	0.994512
571		80		20	0.995493
573		20	80		0.995493
575		80	20		0.995493
610		20		80	0.995493
612		80		20	0.995493
613		20		80	0.995493
615		80		20	0.995493
616	80		20		0.995493
618		20		80	0.995493
619		20		80	0.995493
620			80	20	0.995493
623		80	20		0.995493
626		80	20		0.995493
628	80	20			0.995493
629	20		80		0.995493
631	80			20	0.995493
632	80	20			0.995493
674	80			20	0.995493
675	80			20	0.995493
676		20		80	0.995493
678	80	20			0.995493
729	25		75		0.996473
907	75			25	0.996473
908		25	75		0.996473
910	75	25			0.996473
997		11		88	0.923564
999	11	11	77		0.968132
1000		11	88		0.923564
1001	77			22	0.999999
1002		11	88		0.923564
1005		11		88	0.923564
1006	88			11	0.923564
1007		88		11	0.923564
1008	88		11		0.923564
1012		88	11		0.923564
1013			88	11	0.923564
1014	88	11			0.923564
1016	88	11			0.923564
1018	11		88		0.923564
1029	88	11			0.923564
1030			11	88	0.923564
1050		50		50	1.0
1109		61		38	1.0
1179	42		50	7	1.0
1276	20		80		0.995493
1283		20		80	0.995493
1284	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain