SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene8252

Length: 336 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene8252
CGTGACCTTGGCTGTCACTCAACTCTATAGATTTCTACAATGAGAAGATTAAGGATTTATCAGCCAAGCTGGAAACAAAACAAAAGATTACACTGATAGAGAAACAGGTTGCAGCAGCATTTATAATTTTCAACAGCAGGCCTGCTGCAGCGGCTGCATCTCAGGTTGTGCATTCACAGTTTGCAGATAGATGGACTGTAATGGCTGCTCCTGAGCCTCGTCAAATACTGTGGAAAAACCTTGCCATGCCCTTCTATCAGAGGATGATTCGAGAGAAGATTGTATACATTATTGTGTTTCTAGCTATTATTTTCTACATGATTCCCATCACCTTTG

Ace file of the UniGene uagpf_v2_unigene8252 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16581	3/5
SustainPine v2.0	sp_v2.0_unigene34346	2/5

Source	Descriptions	Term	Type	Identity
AutoFact	Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana] gb\|AAG51102.1\|AC025295_10 unknown protein [Arabidopsis thaliana] gb\|AAK59597.1\| unknown protein [Arabidopsis thaliana] gb\|AAL34230.1\| unknown protein [Arabidopsis thaliana] gb\|AE	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	35%
Blast2go	uncharacterized membrane	-	-	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Domain of unknown function DUF221	IPR003864	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKM0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 338 aas, your sequence is shorter than subject: 111 - 717

Fln protein: *PWLSLNSIDFYNEKIKDLSAKLETKQKITLIEKQVAAAFIIFNSRPAAAAASQVVHSQFADRWTVMAAPEPRQILWKNLAMPFYQRMIREKIVYIIVFLAIIFYMIPITF

Protein Length: 112

Fln nts: CGTGACCTTGGCTGTCACTCAACTCTATAGATTTCTACAATGAGAAGATTAAGGATTTATCAGCCAAGCTGGAAACAAAACAAAAGATTACACTGATAGAGAAACAGGTTGCAGCAGCATTTATAATTTTCAACAGCAGGCCTGCTGCAGCGGCTGCATCTCAGGTTGTGCATTCACAGTTTGCAGATAGATGGACTGTAATGGCTGCTCCTGAGCCTCGTCAAATACTGTGGAAAAACCTTGCCATGCCCTTCTATCAGAGGATGATTCGAGAGAAGATTGTATACATTATTGTGTTTCTAGCTATTATTTTCTACATGATTCCCATCACCTTTG

Fln Alignment:

Contig8252___LNSIDFYNEKIKDLSAKLETKQKITLI-EKQVAAAFIIFNSRPXXXXASQVVHSQFADRWTVMAAPEPRQILWKNLAMPFYQRMIREKIVYIIVFLAIIFYMIPITF
B8LKM0_______________VDPVDLYTKKLEDVEENVKLEQSTFYQNEKELPAAFVSFRSRYGAAMASQLVQSSNPLLWVTEPAPEPSDIYWPFLSAPYIQLWISKFVVVVAVFFLTILFLVPVTF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain