SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7654

Length: 1892 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene7654

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17814	33/35
SustainPine v2.0	sp_v2.0_unigene77885	1/35

Source	Descriptions	Term	Type	Identity
AutoFact	putative DegP2 protease [Oryza sativa Japonica Group]	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	26%
Blast2go	protease do-like 9-like	-	-	91%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	HMG-I/HMG-Y, DNA-binding, conserved site	IPR000637	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap	IPR001254	-	-
Sma3	PDZ domain	IPR001478	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase S1C, HrtA/DegP2/Q/S	IPR001940	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Peptidase S1B, glutamyl endopeptidase I	IPR008256	-	-
Sma3	Serine endopeptidase DegP2	IPR015724	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

SNPs (tot: 59)

Position	A %	C %	G %	T %	Probability
307			83	16	0.994512
385	66		33		0.997452
386	33	66			0.997452
389		66		33	0.997452
391	66		33		0.997452
395		66		33	0.997452
397	33	66			0.997452
399	66			33	0.997452
400		33	66		0.997452
407	85		14		0.993533
409	85		14		0.993533
412	14	85			0.993533
415	85	14			0.993533
416	85			14	0.993533
419		85	14		0.993533
421	85			14	0.993533
422	85		14		0.993533
423		85		14	0.993533
424	85	14			0.993533
428	85			14	0.993533
628			20	80	0.995493
630		20		80	0.995493
632			80	20	0.995493
633	80		20		0.995493
635		20		80	0.995493
638		80		20	0.995493
639		80	20		0.995493
640			20	80	0.995493
644	80			20	0.995493
646	20		80		0.995493
647		20	80		0.995493
648	80			20	0.995493
649		20	80		0.995493
720	54	18		27	1.0
721			45	54	1.0
722	27			72	1.0
724		27	54		1.0
725			72	27	1.0
728	18		81		0.999994
729		27		45	1.0
731			54	45	1.0
732	54		27	18	1.0
733			18	81	0.999994
734		27	72		1.0
735	81	18			0.999994
737		27	72		1.0
756	76		23		1.0
759	76	23			1.0
760	76		23		1.0
765	76	23			1.0
766			76	23	1.0
768	76		23		1.0
772			15	84	0.999986
773	83			16	0.999991
774	75	25			1.0
776		25	75		1.0
778		16		83	0.999991
779	16			83	0.999991
1237	75		25		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
416	427	CAA CAA CAA CAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain