SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7096

Length: 973 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene7096

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9374	1/11
SustainPine v2.0	sp_v2.0_unigene28251	10/11

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SEH0_RICCO	-	-	5.0e-28	34%
FL-Next	tr=Protein binding protein, putative; Ricinus communis (Castor bean).	-	-	0.0	36%
Blast2go	protein decapping 5	-	-	8.42562e-29	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	deadenylation-independent decapping of nuclear-transcribed mRNA	GO:0031087	Biological Process	8.42562e-29	59%
Blast2go	negative regulation of translation	GO:0017148	Biological Process	8.42562e-29	59%
Blast2go	cytoplasmic mRNA processing body assembly	GO:0033962	Biological Process	8.42562e-29	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SEH0

Fln msg: Distance to subject end: 89 aas, your sequence is shorter than subject: 324 - 665

Fln protein: RRDLGCHSSSCAAATFAFSATPWNANSTYCRDLCCHSVLSSLPTGLSTTSVFINSLQQTPASALRFSESSTGAAPIPVVSISSTIAAGTLSNAMPMSLPLSETLAPIVSSDHDVSAIVTAATSKPRSVTGSTSSLQSISQTVSVSTPLSLSTSAPPTLVTPGQLLQPGGSVSSLKSQSSTQEPKVTENSNLLSQPVIPAAPDSQPQRVSTQPLLPLPTTSSQLRTSQQVNVAFGHSGNNHRGRGRGRGRMAPHASTKFTEDFDFTAMNEKFKKDEVWGHLGKSELKDKVEEGEEDEKTERNSDDEENSRQSSNAKPVYVKDDFF

Protein Length: 325

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCCTCATGTGCAGCAGCAACCTTTGCATTTTCAGCCACCCCCTGGAATGCCAATTCCACCTACTGTCGTGACCTTTGCTGTCACTCAGTTCTTTCATCATTGCCTACAGGGCTGTCAACTACTTCAGTGTTCATCAATTCTTTGCAACAGACACCTGCTTCGGCACTGCGTTTTAGTGAATCGTCTACTGGGGCAGCTCCAATTCCTGTGGTTTCAATCTCATCAACAATTGCAGCTGGAACTCTGTCCAATGCTATGCCTATGTCTTTACCACTTAGCGAAACGTTGGCACCAATTGTTTCCTCAGATCATGATGTTAGTGCTATTGTAACAGCAGCAACCAGTAAACCTCGATCTGTGACAGGATCAACTTCTTCCCTCCAGTCTATATCTCAAACTGTTTCAGTGTCTACTCCATTAAGTCTGTCAACTTCAGCACCACCTACTCTAGTGACTCCAGGACAACTACTGCAACCTGGAGGGTCTGTGTCTTCATTGAAAAGCCAATCGTCAACGCAGGAACCTAAAGTCACAGAAAATTCAAATTTGCTATCTCAGCCTGTGATTCCAGCAGCACCCGATTCACAGCCTCAGAGAGTGTCAACGCAGCCATTGTTGCCACTTCCAACAACGTCGAGTCAACTAAGAACATCTCAACAGGTTAATGTCGCCTTTGGGCATTCTGGTAACAATCACAGGGGCCGTGGAAGAGGCAGGGGGCGCATGGCTCCGCATGCATCAACAAAATTTACAGAAGATTTTGATTTTACAGCCATGAATGAGAAGTTTAAAAAGGATGAAGTATGGGGCCATCTTGGAAAAAGTGAATTGAAAGATAAGGTTGAGGAGGGAGAGGAGGATGAGAAAACAGAGAGAAATAGTGACGATGAAGAGAACTCGAGACAGTCTTCTAACGCTAAGCCTGTCTATGTGAAAGATGACTTTTTTG

Fln Alignment:

Contig7096___SSTGAAPIPVVSISSTIAAGTLSNAMPMSLPLSETLAPIVSSDHDVSAIVTAATSKPRSVTGSTSSLQSISQXXXXXXXXXXXXXXXXXXXXX--GQLLQPGGXXXXXXXXXXT--QEPKVTENSNLLS-QPVIPAAPDSQPQRVXXXXXXXXXXXXXXXXXXXXVNVAFXXXXXXXXXXXXXXXXMAPHASTKFTEDFDFTAMNEKFKKDEVWGHLGKSXXXXXXXXXXXXXXXXRNSDDEENSRQSSNAKPVYVKDDFF
B9SEH0_______________SETIPSLVPNKTPSSTLPAANLSPSLP-------ALSPLTSSGPELNTIIPPLSNKSNAISGPTVPYQSIAQPTALVVPSNSLRTEAPTPSLVTPGQLLQSGPTTVTTLQPVQTVHKDVEVVQVSSTSSTEPSVPVVTEAQPPILPLPVPARASHKP---------NGAPFHSRQGYRGRERGRGTGNSHPVTKFTEDFDFMAMNEKFKKDEVWGHLGKSNKKDREDGKASDEDDSQEEDDDELNK--IDTKPVYNKDDFF

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
127	66		33		0.997452
129		33		66	0.997452
131		66		33	0.997452
132		66	33		0.997452
133	33			66	0.997452
134	66	33			0.997452
136	66			33	0.997452
137			66	33	0.997452
153			40	60	1.0
158	60			40	1.0
160	40			60	1.0
161		40		60	1.0
163	60			40	1.0
165		60	40		1.0
166	60		40		1.0
167	60	40			1.0
172	40			60	1.0
173		40		60	1.0
175		40	60		1.0
176	40	60			1.0
222		33	66		1.0
224			66	33	1.0
228		33	66		1.0
231		63		36	1.0
232		72	27		1.0
233	63		36		1.0
234	63	27		9	1.0
236	9		27	63	1.0
237		72		27	1.0
239	27			72	1.0
240		27	63		1.0
243		27	72		1.0
244	27			72	1.0
474		88		11	0.923564
477	88		11		0.923564
545	80			20	0.995493
546	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain