SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6667

Length: 894 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6667

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6681	27/28

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0354 Predicted aminomethyltransferase related to GcvT	-	-	2.0e-22	28%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	54%
Blast2go	protein	-	-	0.0	70%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.1.2.1-	-	0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	small molecule metabolic process	GO:0044281	Biological Process	70%
Blast2go	cellular metabolic process	GO:0044237	Biological Process	70%
Blast2go	aminomethyltransferase activity	GO:0004047	Molecular Function	70%

Source	InterPros	Term	Type	Identity
Sma3	Glycine cleavage T-protein, N-terminal	IPR006222	-	-
Sma3	Glycine cleavage T-protein, C-terminal barrel	IPR013977	-	-
Sma3	YgfZ/GcvT conserved site	IPR017703	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D8S5U5

Fln msg: Separated hits, possible frame ERROR between 444 and 456, Unexpected STOP codon at 3' end. Distance to subject end: 161 aas, your sequence is shorter than subject: 258 - 404

Fln protein: MLPWRLILAKALNSPKQGFTARFAGKTRAACNFHSSPGSEYHESSAGSTPLSERGPFVSRLKSRGVLRFDGPDAVKYLQGLVTNDLRRLEETPSDAGVSVPTPNQPRSLxxxxxIYTAFLTPQGRFLYDLFVYRPIRAEEKLDGTGSGPGGDPHQPALLADVDIHFLDELLDHLKKYRLRAKVEIQDVSKDMAAWQRFGRSLVDDSDVDKDAEGKSIGWGGGADFAGRAAAQSNGQGWRWFRDPRLASMGLRGLRSE*

Protein Length: 259

Fln nts: TGTATCGACCTTCGTCGTGACCTTGGCTGTCACTCAATCACAGACACACATAAGCATTCGACCCACAGAACTCCAAACGCCTAATATTACCGGTTTAAATCCAGACTGCATAGC_-_ATGCTTCCGTGGAGGTTGATTTTGGCCAAAGCTTTAAATTCGCCCAAGCAAGGGTTTACAGCGCGGTTTGCAGGGAAAACCAGGGCAGCCTGCAATTTCCATTCGTCCCCAGGCTCAGAGTACCATGAATCTTCGGCGGGCTCGACTCCTCTAAGCGAGCGGGGGCCCTTCGTTTCCCGCCTCAAGAGCCGCGGGGTGCTGCGCTTCGACGGTCCGGACGCTGTAAAGTATCTCCAGGGCCTCGTCACTAATGATCTCCGACGGTTGGAGGAGACCCCTTCAGACGCCGGGGTCTCTGTGCCAACGCCGAACCAGCCTCGTAGTCTTCAxxxxxxxxxxxxAATCTATACGGCGTTTCTCACTCCCCAGGGAAGATTTCTGTATGACTTGTTCGTTTATCGCCCCATCCGGGCCGAGGAAAAGCTCGACGGGACTGGCTCTGGCCCGGGCGGGGATCCACATCAGCCTGCCCTGCTCGCTGACGTCGACATTCATTTCCTAGATGAGCTTCTTGACCACTTGAAGAAATATCGTTTGCGAGCAAAGGTGGAAATCCAGGATGTTTCAAAAGACATGGCAGCCTGGCAACGTTTTGGTCGTTCCTTGGTGGATGATTCTGATGTAGATAAAGATGCTGAAGGCAAAAGCATTGGTTGGGGTGGAGGTGCTGATTTTGCTGGCCGTGCTGCTGCACAAAGCAATGGTCAAGGATGGCGGTGGTTCAGGGATCCAAGATTGGCATCTATGGGATTAAGGGGCCTTCGCAGTGAGTGACaGGCCA

Fln Alignment:

Contig6667___SPGSEYHESSAGSTPLSERGPFVSRLKSRGVLRFDGPDAVKYLQGLVTNDLRRLEETPSDAGVSVPTPNQPRSLQxxxxIYTAFLTPQGRFLYDLFVYRPIRAEEKLDGTGSGPGGDPHQPALLADVDIHFLDELLDHLKKYRLRAKVEIQDVSKDMAAWQRFGRSLVDDSDVDKDAEGKSIXXXXXXXXXXXXXXQSNGQGWRWFRDPRLASMGLRGLRS
D8S5U5_______________SRGAPSDLSSSGATALADRGPFASRLKSRAVLGFDGDDTFKFLQGLATNDVLQLEADEHSAKLGTPTPNQPGVVQxxxxIYTGILNPQGRFLFDMFLYKPVQESEKLGKGGDAPGAGKSVPQLVADVDAASFDDLIAYLKRYILRSKVNIEDLSKDLCAWQRFGGALAGSSTSETGA--GNIGWAGGRDLSGTTAAEGNGKGWRWFKDPRLDALGFRGVFS

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
256		87		12	0.992554
342	80	20			0.995493
346	80		20		0.995493
348		80	20		0.995493
349	20			80	0.995493
352	80			20	0.995493
353			80	20	0.995493
433		40	60		1.0
440	40			60	1.0
442		40		60	1.0
444		40		60	1.0
445	40		60		1.0
450			40	60	1.0
481		75	16	8	0.99999
482		83		16	0.999991
483	83	16			0.999991
485			75	25	1.0
488	81	18			0.999994
489		18	81		0.999994
490	81			18	0.999994
492			18	81	0.999994
493			18	81	0.999994
500		18	81		0.999994

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain