SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5571

Length: 1540 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5571

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4828	34/35

Source	Descriptions	Term	Type	Identity
AutoFact	2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial n=2 Tax=Oryza sativa RepID=COQ5_ORYSJ	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	ubiquinone biosynthesis methyltransferase coq5	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	0.0	84%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	84%
Blast2go	Tetracycline biosynthesis	00253	84%
Blast2go	Histidine metabolism	00340	84%
Blast2go	Tyrosine metabolism	00350	84%
Blast2go	Phenylalanine metabolism	00360	84%
Blast2go	Tryptophan metabolism	00380	84%
Blast2go	Benzoxazinoid biosynthesis	00402	84%
Blast2go	Selenocompound metabolism	00450	84%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	84%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	84%
Blast2go	Methane metabolism	00680	84%
Blast2go	Porphyrin and chlorophyll metabolism	00860	84%
Blast2go	Carotenoid biosynthesis	00906	84%
Blast2go	Phenylpropanoid biosynthesis	00940	84%
Blast2go	Flavonoid biosynthesis	00941	84%
Blast2go	Anthocyanin biosynthesis	00942	84%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	84%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	84%
Blast2go	Insect hormone biosynthesis	00981	84%
Blast2go	Biosynthesis of type II polyketide products	01057	84%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	84%
Blast2go	Metabolic pathways	01100	84%
Blast2go	Biosynthesis of secondary metabolites	01110	84%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	84%
Blast2go	amino acid transport	GO:0006865	Biological Process	84%
Blast2go	methylation	GO:0032259	Biological Process	84%
Blast2go	methyltransferase activity	GO:0008168	Molecular Function	84%
Blast2go	membrane	GO:0016020	Cellular Component	84%
Blast2go	mitochondrion	GO:0005739	Cellular Component	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTN7

Fln msg:

Fln protein: MASMTIGCHYTYLLPRLACRPMPTTSPACLHSHATSFGFKDVPEEEKSRMVGDVFSNVASKYDIMNDIMSVGLHRLWKDRLVSKLSPFPGMQHLDVAGGTGDVAFRVLEALHSLERQKISDAAVDEDVENETRVFICDINPAMLDVGRRRANAKGLGEARSLIWMEGDAEALKFEDASMDGYTIAFGIRNVTHIEKALSEAYRVLRPGGRFLCLELSHVNIPGFRELYDFYSFSVIPSIGEIVAGDRASYQYLVESIRKFPSQEKFAAMIKEAGFEKVEYENLSGGVVAIHSGFKL*

Protein Length: 298

Fln nts: AACCATTTTGAATGGCAGTGGGAATAGGTGGGGAAACGCACGACGGTACGATCGAACTATCGATGGCATAAGGCAAATAGCCGGCTTCTAGCAGTGGTCAAACAGAACAGAAAGTTTTGGCATGCTGTACACACAAATTGAACTGCAAAAGAA_-_ATGGCGTCGATGACCATTGGCTGTCACTACACATATTTACTTCCTCGCCTCGCCTGCCGCCCAATGCCCACGACCTCCCCAGCGTGCTTGCATTCTCATGCCACCAGCTTTGGCTTTAAAGATGTGCCCGAAGAGGAGAAGAGCAGAATGGTTGGTGATGTTTTCAGTAATGTTGCCTCAAAATATGACATCATGAATGACATAATGAGTGTTGGTCTTCACCGGCTTTGGAAGGATAGACTTGTCTCAAAATTGAGTCCATTTCCAGGAATGCAGCATCTTGATGTAGCTGGTGGGACAGGAGATGTAGCATTTCGTGTTTTAGAAGCTCTCCATTCCCTTGAACGTCAAAAGATCTCAGATGCTGCAGTGGATGAAGATGTTGAAAATGAGACTCGAGTCTTTATCTGTGATATCAACCCTGCAATGCTGGATGTTGGTAGAAGACGTGCAAATGCTAAAGGGCTGGGAGAGGCCCGTTCACTAATATGGATGGAAGGAGATGCAGAAGCCCTTAAATTTGAAGATGCGTCAATGGATGGTTACACCATTGCTTTTGGAATAAGAAATGTAACACATATAGAAAAAGCTCTGAGCGAAGCATACAGAGTCTTAAGGCCGGGTGGAAGATTTCTGTGTCTTGAGTTGAGCCATGTCAACATCCCTGGTTTCCGAGAATTATATGATTTTTACTCATTTTCAGTTATTCCATCTATTGGAGAAATTGTTGCTGGCGATCGTGCATCTTACCAATATTTAGTGGAGAGCATACGCAAGTTTCCATCTCAGGAAAAGTTCGCTGCAATGATTAAGGAAGCAGGCTTTGAGAAAGTTGAATATGAGAACCTTTCAGGCGGAGTAGTTGCAATTCATTCTGGATTCAAATTATAA___TTCACAAATATAAGATTTTGACATTGCTTTTGTAGAGCAGTTACCTTAAAGGCAATTGACGTGGTATTTGAAATCGAAGACTAGCAAACTGTGCCTGTGCGGGGCATTGTTTAGAAAAATCTGTCTAAGCTGATTTTGGCCATTACAGTGTTTGATGGGTCTACTGTTTTAATTACAGAAGCAGCGGAGGGGTACTATATTTATTCTGGATGCGTTGCTTTGAAGAATCGATTCAAATTTCAAAGGACTTTAAGATCACAACATTGATTTTTATTTGTCCAAAAAAATGGTTGGCTGAACTTCACTATCATCATAGACTTGCTCCATTATTTGGTCCAATGGCCCTTGACAACCCTCTTTTCTGTATGGTCCTTAAATTATTCCACACTGGATTCTGGTGGATGCAAATATGATTCATCATTGTATGGCTCTGGCATCTTTATCATTCATAGTAGCTTACTATTGGAAGTTTAAAGGTTTCTTCTACCATAATGTT

Fln Alignment:

Contig5571___MPTTSPACLHSHATSFGFKDVPEEEKSRMVGDVFSNVASKYDIMNDIMSVGLHRLWKDRLVSKLSPFPGMQHLDVAGGTGDVAFRVLEALHSLERQKISDAAVDEDVENETRVFICDINPAMLDVGRRRANAKGLGEARSLIWMEGDAEALKFEDASMDGYTIAFGIRNVTHIEKALSEAYRVLRPGGRFLCLELSHVNIPGFRELYDFYSFSVIPSIGEIVAGDRASYQYLVESIRKFPSQEKFAAMIKEAGFEKVEYENLSGGVVAIHSGFKL
C0PTN7_______________MPITSPALLHSHATSFGFKEVPEEEKSRMVGDVFSSVASKYDIMNDIMSVGLHRLWKDRLVSKLSPFPGMQHLDVAGGTGDIAFRVLEAIHSLERQRISGVAVDEDAEDETRVFICDINPAMLDVGRRRAIAKGLGEARSLIWMEGDAEALKFEDASMDGYTIAFGIRNVTHIEKALSEAYRVLRRGGRFLCLELSHVDIPGFRDLYDFYSFSVIPSVGEIVAGDRESYQYLVESIRKFPSQEKFATMIKEAGFEKVEYENLAGGVVAIHSGFKL

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
90	66	33			0.997452
92		66		33	0.997452
93	66	33			0.997452
97	33		66		0.997452
98		33		66	0.997452
101	66			33	0.997452
102	66		33		0.997452
103	66		33		0.997452
105	66			33	0.997452
108	66	33			0.997452
112			66	33	0.997452
113	66	33			0.997452
163		50		50	1.0
166			50	50	1.0
168	50			50	1.0
172	50			50	1.0
174	50		50		1.0
175			50	50	1.0
177		50		50	1.0
179		50		50	1.0
180	50	50			1.0
182	50	50			1.0
257		77	22		0.999999
258	77			22	0.999999
260		77	22		0.999999
261	77			22	0.999999
265		22		77	0.999999
274		25		75	1.0
276	75	25			1.0
277	75			25	1.0
278		25	75		1.0
381	10		90		0.90298
533			83	16	0.994512
688	33		66		0.997452
892		50	50		1.0
916	75	25			1.0
919		25	75		1.0
921	75			25	1.0
926	75	25			1.0
928	75			25	1.0
929		75	25		1.0
933	75			25	1.0
936		25		75	1.0
937	25			75	1.0
1055	90	10			0.999898
1056	90		10		0.999898
1058	90		10		0.999898
1060	90		10		0.999898
1062		10	90		0.999898
1063	90	10			0.999898
1066		10		90	0.999898
1069	90			10	0.999898
1073	10			89	0.999919

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain