SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4974

Length: 602 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene4974

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene247	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	Flavoprotein wrbA, putative n=1 Tax=Ricinus communis RepID=B9SI05_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	quinone reductase family protein	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on NADH or NADPH, With a quinone or similar compound as acceptor.	EC:1.6.5.-	-	0.0	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624		0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	87%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	87%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	87%
Blast2go	oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	GO:0016655	Molecular Function	87%
Blast2go	FMN binding	GO:0010181	Molecular Function	87%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Flavodoxin/nitric oxide synthase	IPR008254	-	0.0	-
Sma3	Flavoprotein WrbA	IPR010089	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
98		66	33		0.997452
100		33		66	0.997452
101	33		66		0.997452
103	33	66			0.997452
105		33		66	0.997452
112			33	66	0.997452
149		75	25		0.996473
150	75			25	0.996473
151	75	25			0.996473
153	75			25	0.996473
154	75		25		0.996473
156	75	25			0.996473
157		25		75	0.996473
158	75			25	0.996473
159		75		25	0.996473
160			25	75	0.996473
163	75			25	0.996473
164		75	25		0.996473
166	75	25			0.996473
170			75	25	0.996473
172	25	75			0.996473
187		42	57		1.0
188	28		71		1.0
191		85	14		0.993533
193		14		85	0.993533
194		14		85	0.993533
195	85			14	0.993533
200	85		14		0.993533
204		12		87	0.992554
206	12			87	0.992554
207		12		87	0.992554
208			12	87	0.992554
211	12			87	0.992554
214		87	12		0.992554
215	87		12		0.992554
219			87	12	0.992554
220		12	87		0.992554
223	87	12			0.992554
224	12	87			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain