SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4212

Length: 1297 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene4212

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2526	29/31
SustainPine v2.0	sp_v2.0_unigene18634	1/31

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger, CCCH-type; Sugar transporter superfamily [Medicago truncatula]	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	nucleic acid binding	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	68%
Blast2go	nuclease activity	GO:0004518	Molecular Function	68%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	68%

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	NPH3	IPR004249	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/POZ	IPR013069	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PR62

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 71 aas, your sequence is shorter than subject: 373 - 468

Fln protein: MDYNAAMQGGFARQRGLVIDPDGWQQHGRPRAEIGGVEEAMWQMTLQQQHESLEPEIGSYPERPGEPDCTYYMRTGLCGFGMSCRFNHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPPPVGPLVPVRGSSLFTPVQSPTTPGPQAYPGSLQTWPMQRASFIQSPRWQGPSSYAPLILPQGIVPVPSWSTYPQGQVGSISSSDGQQQAIGAGLVYGPTSQTDPMASGIQGTFSSFPPGSPGMGPPTLQLPSSSAQRESMFPERPGQQECQFYMKTGDCKFGMTCRYHHPKERIIPIPNCILNSLGLPLR

Protein Length: 374

Fln nts: CGTCGTGACCTTGTCAGATCGATCTGTGGGATGAGGCAAAACCCATCTGCAGAAGCCCGTGAAGAGTGAGATTTCGTTTTCAAGGAGCCTTTTTGATCCCGAATTGGAGGAGAACCAGAGAAACATGGTGTTTGTGGTATAGCGGTTTTGCTTTTTTCGGTTTACAATTGTACAGGGTTTG_-_ATGGATTACAATGCGGCAATGCAAGGCGGTTTTGCGAGGCAGCGGGGTTTGGTGATCGATCCTGATGGCTGGCAGCAGCATGGGAGGCCGAGAGCAGAGATTGGTGGAGTTGAAGAGGCTATGTGGCAAATGACTCTGCAACAACAGCATGAAAGTTTGGAGCCAGAAATTGGCTCTTATCCAGAAAGGCCCGGTGAACCTGACTGCACATATTACATGCGGACTGGACTTTGTGGCTTTGGCATGAGCTGTCGGTTTAACCATCCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATCCACCACCAGTTGGTCCATTAGTTCCAGTGCGTGGGTCTTCACTTTTCACACCTGTACAATCTCCAACAACTCCTGGCCCTCAAGCCTATCCAGGAAGTCTGCAAACATGGCCAATGCAAAGGGCATCTTTTATTCAGAGTCCTCGCTGGCAAGGCCCTTCTAGTTATGCACCATTGATCCTTCCTCAAGGAATAGTGCCAGTTCCTAGCTGGAGTACATATCCTCAAGGACAGGTGGGTTCAATTTCATCTTCAGATGGTCAGCAACAAGCAATAGGAGCAGGTTTGGTCTATGGGCCCACATCCCAAACAGATCCAATGGCCTCTGGAATTCAGGGCACCTTTTCTTCTTTTCCACCTGGATCTCCAGGCATGGGGCCTCCAACGTTACAATTGCCATCGAGCAGTGCCCAGAGGGAAAGTATGTTCCCTGAAAGGCCTGGTCAGCAAGAATGTCAGTTCTACATGAAGACAGGCGACTGTAAATTTGGCATGACCTGTAGATACCATCATCCTAAAGAGAGGATCATTCCCATTCCAAACTGTATCCTCAATTCTCTTGGCTTACCTCTACGACC

Fln Alignment:

Contig4212___MDYNAAMQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
C0PR62_______________MEYNAAMQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
58		33		66	1.0
74		33		66	0.997452
234			88	11	0.923564
248		10		90	0.90298
250			88	11	0.999937
254	11		88		0.999937
256	88	11			0.999937
257			88	11	0.999937
258		88		11	0.999937
259	88		11		0.999937
265			88	11	0.999937
266		11	88		0.999937
269		11	88		0.999937
270		88		11	0.999937
272	11		88		0.999937
335	58		41		1.0
356		58		41	1.0
532	85	14			0.993533
533			16	83	0.994512
534		16		83	0.994512
750			50	50	1.0
756		50	50		1.0
757	50		50		1.0
758		50	50		1.0
761	50			50	1.0
855	88	11			0.923564
856			11	88	0.923564
861	88			11	0.923564
863	11			88	0.923564
867		88	11		0.923564
872			88	11	0.923564
877		11	88		0.923564
878		88		11	0.923564
880	11	88			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain