SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3649

Length: 1553 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene3649

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11075	12/14
SustainPine v2.0	sp_v2.0_unigene66468	1/14

Source	Descriptions	Term	Type	Identity
AutoFact	protein TWIN LOV 1 [Arabidopsis thaliana] dbj\|BAB83170.1\| twin LOV protein 1 [Arabidopsis thaliana] gb\|AEC05613.1\| protein TWIN LOV 1 [Arabidopsis thaliana]	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	protein twin lov 1	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	63%
Blast2go	signal transduction	GO:0007165	Biological Process	63%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	63%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	63%
Blast2go	protein binding	GO:0005515	Molecular Function	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	PAC motif	IPR001610	-	0.0	-
Sma3	PAS	IPR000014	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LM24

Fln msg: STOP codon was not found. Distance to subject end: 44 aas, your sequence is longer than subject: 316 - 272

Fln protein: MGLERPVKGSNMCSQLNSRQLVEESLNTRYTDGIREALGQIHSNFVITDPCLLDHPIVYASQGFLKMSGYSTEEVIGRNVRFLQGPDTDRRTILKIREAIREEISCQVSILNYKKSGTAFWNLFHLAPVFSEEDGRVIHFVGVQTPISKFSRSSVSNNVSCSRPSNCPTFVENRFFNHNTSSVISFGSCRRELSRNFSVDLGHNGLYNSLAEEDNAGLEEESTCEAKESDKQKAIAAVTCIFSALTQFSKHTGKTVSDKRSNSADLIRVAPISSSLSIALNRIHQSFVLADPHLPDMPIVHASNLFLQLTGYSRDE

Protein Length: 317

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGGGTAAGAGACTGAACTCTGATGGTTTTTAATAGTAAGATAATGAAATATGGATACCCATTTGAAGACCGCGGAGTTCCCAGAAGGGGGCGGAATAATGTCTGGATACAGATTTGAAGCCTGGTTGATTTTAGTTAAAGGATTGAAAGCTGAAGATCATTAGGACAACTGTTTGTTTTTCATGGGCAAATTCTGTTGTTTTTAACTGGGGAAAACTGTTGAAAGTGGAATACCGACGAGTGGTTTTCAGAGGTCAATGGATTAAGTATCTTCAGAGCCATGTGATGATTGATTCACAGGACATTGATATCCAAAAACCCATTTGAATCTTGATTCATTTTCAGCAGGCAGAAGAATAAGCCACACGAAAACATTGGAATATTGATTGATTTATTTATTTTGAGGCCTTTTGAGGGGTTTTGAGAGGGAGGCGCATCTGCAGTCTGTTTGTTCTTAAATTGGGATTTGCATTTCCTTTGAAAGATTGTTGAATTCGGATGCAGAGACAGGCTTCGTTAGTATCCCGTGCTTCAATACCATCCTTGTGTATTGGGTGCCTATCAATTCAATAGCAGAGAT_-_ATGGGATTGGAGCGACCTGTTAAAGGGAGCAACATGTGTAGTCAACTGAATAGCAGGCAATTGGTAGAGGAGTCCCTGAACACACGTTATACAGATGGCATCAGAGAAGCGCTTGGACAGATTCACTCCAATTTTGTCATAACGGATCCATGCCTTTTAGACCACCCAATAGTGTATGCAAGTCAAGGTTTCTTGAAGATGTCAGGTTATTCCACAGAAGAAGTGATTGGTAGAAATGTTAGGTTTCTTCAAGGACCCGATACCGATAGGAGAACTATTTTGAAAATCCGAGAAGCTATTAGAGAAGAGATATCCTGCCAGGTTAGTATTTTGAATTATAAAAAGAGTGGCACAGCCTTCTGGAACCTTTTCCATTTGGCTCCAGTGTTTTCTGAGGAAGATGGCAGAGTAATTCATTTCGTTGGAGTGCAAACTCCTATATCAAAATTTTCTCGATCTAGTGTCAGCAATAACGTATCTTGCAGTAGGCCCAGTAATTGCCCTACATTTGTAGAAAACAGGTTTTTCAACCACAATACATCAAGTGTCATTTCTTTTGGCTCATGCCGAAGGGAGCTCTCTAGGAATTTCTCGGTTGATTTGGGCCATAATGGACTGTACAATTCGTTAGCAGAGGAGGACAACGCGGGGTTAGAGGAGGAATCGACATGTGAAGCTAAGGAATCTGACAAGCAGAAAGCAATTGCTGCCGTCACTTGTATTTTTTCTGCACTGACACAATTCAGCAAGCACACAGGAAAGACTGTTTCGGATAAAAGAAGTAATTCAGCTGATCTAATCAGGGTAGCACCCATTAGTTCATCTTTATCCATTGCGCTTAACAGAATACATCAAAGTTTTGTATTAGCTGACCCTCACTTACCTGACATGCCCATTGTACATGCAAGCAATTTGTTTCTACAATTGACAGGCTATTCTAGAGATGAAG

Fln Alignment:

Contig3649___MGLERPVKGSNMCSQLNSRQLVEESLNTRYTDGIREALGQIHSNFVITDPCLLDHPIVYASQGFLKMSGYSTEEVIGRNVRFLQGPDTDRRTILKIREAIREEISCQVSILNYKKSGTAFWNLFHLAPVFSEEDGRVIHFVGVQTPISKFXXXXXXXXXXXXXXXXXXTFVENRFFNHNTSSVISFGSCRRELSRNFSVDLGHNGLYNSLAEEDNAGLEEESTCEAKESDKQKAIAAVTCIFSALTQFSKHTGKT
B8LM24_______________MGLERPVKGSKMCTQLNSRQLIEESLNIRYSDGIREALGQVHFNFVITDPCLLDHPIVYASQGFLKMSGYSTEEVVGRNVRFLQGPDTDRRTVLTIREAIREEKSCQVSILNYKKNGTAFWNLFHLAPVFSEGDGRVIHFVGVQTPISKFSRSSVSNNVSCSRPNNCPAFVENMLFNHHTSSAIYFGSCRRELFSNFSVDLGHSGLYNSLAEEDNAGLEEEPTCEAKESDKQKAIAAATRILFELTQFSKHTELT

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
489	66	33			0.997452
490	33			66	0.997452
491		33		66	0.997452
493		33	66		0.997452
494	33	66			0.997452
641		25		75	0.996473
644	75	25			0.996473
647		75	25		0.996473
649	75	25			0.996473
653	75		25		0.996473
654	75	25			0.996473
656	75		25		0.996473
657			75	25	0.996473
660		25	75		0.996473
661			75	25	0.996473
767		90	10		0.90298
768	90			10	0.90298
770		90	10		0.90298
771		90		10	0.90298
772	90		10		0.90298
774		10		90	0.90298
775	90	10			0.90298
776			90	10	0.90298
779			10	90	0.90298
780	90	10			0.90298
783		90		10	0.90298
784	90	10			0.90298
786		10	90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain