SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2927

Length: 929 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2927

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9113	14/15

Source	Descriptions	Term	Type	Identity
AutoFact	EIN3-binding F-box protein 1 n=1 Tax=Solanum lycopersicum RepID=Q2PQJ0_SOLLC	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	ein3-binding f-box protein 1-like	-	-	64%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Leucine-rich repeat, cysteine-containing subtype	IPR006553	-	-

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
419		25		75	1.0
422			25	75	1.0
423	25			75	1.0
433		75	25		1.0
440	75			25	1.0
441	75	25			1.0
442	25		75		1.0
559			88	11	0.923564
564	88	11			0.923564
565			88	11	0.923564
567	88		11		0.923564
571			88	11	0.923564
573			88	11	0.923564
577		11	88		0.923564
578	11			88	0.923564
660		87	12		0.992554
661	87			12	0.992554
662	87	12			0.992554
670		87		12	0.992554
672			12	87	0.992554
673	87		12		0.992554
674	87	12			0.992554
675	87			12	0.992554
676	87		12		0.992554
678		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain